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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Aug 12 21:45:18 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/MUSTANG_HOMSTRAD/results/TPR.html
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#====================================
# Aligned_structures: 6
#   1: 1a17.pdb
#   2: 1e96b.pdb
#   3: 1elra.pdb
#   4: 1elwa.pdb
#   5: 1fcha.pdb
#   6: 1ihga.pdb
#
# Length:        284
# Identity:        1/284 (  0.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      4/284 (  1.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          179/284 ( 63.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a17.pdb                1  PPADGALKRAE--------------------ELKTQANDYFKAK----DYENAIKFYSQA   36
1e96b.pdb               1  -----SLVEAI--------------------SLWNEGVLAADKK----DWKGALDAFSAV   31
1elra.pdb               1  ------GKQAL--------------------KEKELGNDAYKKK----DFDTALKHYDKA   30
1elwa.pdb               1  -------EQVN--------------------ELKEKGNKALSVG----NIDDALQCYSEA   29
1fcha.pdb               1  -----------SATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD   49
1ihga.pdb               1  ------LLISE--------------------DLKNIGNTFFKSQNWEMAIKKYTKVLRYV   34
                                                               g                       

1a17.pdb               37  IELNP--------------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-------   75
1e96b.pdb              32  Q-----------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-------   67
1elra.pdb              31  KELDP--------------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76
1elwa.pdb              30  IKLDP--------------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-------   68
1fcha.pdb              50  P-----------------K-HMEAWQYLGTTQAENEQELLAISALRRCLELKP-------   84
1ihga.pdb              35  EGSRAAAEDADGAKLQPV--ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-------   85
                                                     n             a                   

1a17.pdb               76  -KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK----------------------  112
1e96b.pdb              68  -HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG--------------  112
1elra.pdb              77  Q-IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-------------------------  110
1elwa.pdb              69  -DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN------------------------  103
1fcha.pdb              85  -DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-----YAHLVTRILGSLLSDSLFL  138
1ihga.pdb              86  -SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE------------------------  120
                                                 A                                     

1a17.pdb              113  ------------------DAK-MKYQECNKIVKQK----------------A--------  129
1e96b.pdb             113  -------------LQFKLFAC-EVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKI  158
1elra.pdb             111  --------------------TPDVLKKCQQAEKIL----------------K--------  126
1elwa.pdb             104  --------------------NPQLKEGLQNMEAR--------------------------  117
1fcha.pdb             139  EVKELFLAAVRLDPTSIDPDV-QCGLGVLFNLSG--EYDKAVDCFTAALSV---------  186
1ihga.pdb             121  -------------------DK-AIQAELLKVKQKIK-------------AQK--------  139
                                                                                       

1a17.pdb              130  ----FERAIAGDEHKR-SVVDSLDI--E-SMTIEDEYS------  159
1e96b.pdb             159  DKAMECVWK--------Q-------KLYEPVVIPVG--KLFRPN  185
1elra.pdb             127  ----EQ--------------------------------------  128
1elwa.pdb                  --------------------------------------------     
1fcha.pdb                  --------------------------------------------     
1ihga.pdb             140  ----DKEKA-------A---------------------------  145
                                                                       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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