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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:26:48 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/THF_DHG_CYH.html
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#====================================
# Aligned_structures: 2
#   1: 1a4ia.pdb
#   2: 1b0aa.pdb
#
# Length:        293
# Identity:      121/293 ( 41.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    121/293 ( 41.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           14/293 (  4.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a4ia.pdb               1  APAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAE   60
1b0aa.pdb               1  -AAKIIDGKTIAQQVRSEVAQKVQARIAAG-LRAPGLAVVLVGSNPASQIYVASKRKACE   58
                             A I  GK I  Q R      V           P LA   VG    S  Y   K KA E

1a4ia.pdb              61  EIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPE  120
1b0aa.pdb              59  EVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGI--DNVKVLERIHPD  116
                           E G       LP TT E E    I  LN D T  G LVQLPL          V   I P 

1a4ia.pdb             121  KDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPM  180
1b0aa.pdb             117  KDVDGFHPYNVGRLCQRAP--RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPM  174
                           KDVDG    N GRL          PCTP G   L         G  AVV G S IVG PM

1a4ia.pdb             181  HDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINY-  239
1b0aa.pdb             175  SMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRL  234
                              LL    T T  H  T  L   V   D L VA G P    G WIK GAIVID GIN  

1a4ia.pdb             240  ---KVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLE----  285
1b0aa.pdb             235  ENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE  287
                              KVVGDV    A  RAS ITPVPGGVGPMTVA L   T             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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