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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:20:06 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/THAUMATIN.html
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#====================================
# Aligned_structures: 3
#   1: 1aun.pdb
#   2: 1du5a.pdb
#   3: 1thw.pdb
#
# Length:        219
# Identity:       90/219 ( 41.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    163/219 ( 74.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           22/219 ( 10.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aun.pdb                1  SGVFEVHNNCPYTVWAAAT-----PVGGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFD   55
1du5a.pdb               1  -AVFTVVNQCPFTVWAASV-----PVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFD   54
1thw.pdb                1  -ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFD   59
                            avFevvN CpyTVWAAa      pvgGGRqLnrGeSW i appGTk arIWaRT C FD

1aun.pdb               56  GAGRGWCQTGDCGGVLECKGWGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTK  115
1du5a.pdb              55  ASGRGSCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDG  114
1thw.pdb               60  DSGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGKDY-IDISNIKGFNVPMDFSPTT  118
                            sGrG C TGDCGGvL Ckg GrpPnTLAEyaLnQf nld  DIS IdGFNvPMsF Pt 

1aun.pdb              116  PGPGK-C-HGIQCTANINGECPGSLRV-PGGCNNPCTTFGGQQYCCT--QG-PCGPTELS  169
1du5a.pdb             115  ---GSGCSRGPRCAVDVNARCPAELRQ-DGVCNNACPVFKKDEYCCVGSAANDCHPTNYS  170
1thw.pdb              119  RG----C-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCT--TG-KCGPTEYS  170
                                 C rG rCaading CPa Lr   GgCNnaCtvF   eYCCt   g  CgPTeyS

1aun.pdb              170  RWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFCPYG  208
1du5a.pdb             171  RYFKGQCPDAYSYPKDDATSTFTCPAG-TNYKVVFCP--  206
1thw.pdb              171  RFFKRLCPDAFSYVLDK-PTTVTCPGS-SNYRVTFCPTA  207
                           R FK  CPDAySYp Dd tsTfTCp   tnYkV FCP  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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