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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:24:51 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Syntaxin.html
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#====================================
# Aligned_structures: 2
#   1: 1ez3a.pdb
#   2: 1fioa.pdb
#
# Length:        202
# Identity:       19/202 (  9.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     19/202 (  9.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           90/202 ( 44.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ez3a.pdb               1  RDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPN---PDEKTKEELEELMSDI   57
1fioa.pdb               1  -MHDFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQA-SHLRHSLDNFVAQA   58
                                  F      I    DK       V   H   L   N           L       

1ez3a.pdb              58  KKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYR  117
1fioa.pdb              59  TDLQFKLKNEIKSAQRDGIH----------DTNKQAQAENSRQRFLKLIQDYRIVDSNYK  108
                                K     KS                       Q       F      Y    S Y 

1ez3a.pdb             118  ERCKGRI-----------------------------------------------------  124
1fioa.pdb             109  EENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLEAKTALAEVQARHQELLKL  168
                           E  K                                                        

1ez3a.pdb                  ----------------------     
1fioa.pdb             169  EKSMAELTQLFNDMEELVIEQQ  190
                                                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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