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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:40:32 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Spermine_synth.html
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#====================================
# Aligned_structures: 2
#   1: 1inla.pdb
#   2: 1mjfa.pdb
#
# Length:        298
# Identity:       91/298 ( 30.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     91/298 ( 30.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           40/298 ( 13.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1inla.pdb               1  RTLKELERELQPRQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFA   60
1mjfa.pdb               1  ----------------AFIEWYPR-GYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLA   43
                                              E Y     G   K    IY   S  Q I   E    G   A

1inla.pdb              61  LDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCE  120
1mjfa.pdb              44  LDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVE  102
                           LDG        E  YHE L H  M  HP PK VL IGGGDGGT REVL HD V   I  E

1inla.pdb             121  VDGLVIEAARKYLKQTSCGF------DDPRAEIVIANGAEYVRKFKNEFDVIIIDS----  170
1mjfa.pdb             103  IDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR-GFDVIIADSTDPV  161
                            D  VI       K                A   I  G E        FDVII DS    

1inla.pdb             171  LFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPS  230
1mjfa.pdb             162  LFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYA-  220
                           LF EEFY   YDAL   G                  AY    KVF     Y      Y  

1inla.pdb             231  GMWSYTFASKGI-DPIKDFDPEKVRKFNKELKYYNEE--VHVASFALPNFVKKELGLM  285
1mjfa.pdb             221  SPWAFLVGVKGDIDF-TKIDRERA--KKLQLEYYD--PLMHETLFQMPKYIRETLQ--  271
                             W      KG  D     D E        L YY      H   F  P      L   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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