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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 16:45:49 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/S_100.html
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#====================================
# Aligned_structures: 6
#   1: 1a4pa.pdb
#   2: 1cb1.pdb
#   3: 1cnpa.pdb
#   4: 1mho.pdb
#   5: 1psra.pdb
#   6: 4icb.pdb
#
# Length:        119
# Identity:        5/119 (  4.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     14/119 ( 11.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           52/119 ( 43.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a4pa.pdb               1  -----PSQMEHAMETMMFTFHKFAG----DKGYLTKEDLRVLMEKEFPGFLENQKD---P   48
1cb1.pdb                1  SAQK-------SPAELKSIFEKYAAKEGDP-NQLSKEELKQLIQAEFPSLLKGP-----R   47
1cnpa.pdb               1  ----MASPLDQAIGLLIGIFHKYSGKEGDK-HTLSKKELKELIQKELT-IGSKLQ----D   50
1mho.pdb                1  ------SELEKAVVALIDVFHQYSGREGDK-HKLKKSELKELINNELSHFLEEIKE---Q   50
1psra.pdb               1  ----SNTQAERSIIGMIDMFHKYTR----RDDKIDKPSLLTMMKENFPNFLSACD-KKGT   51
4icb.pdb                1  --MK-------SPEELKGIFEKYAAKEGDP-NQLSKEELKLLLQTEFPSLLKGP------   44
                                              F ky          l K  L  l   e    l         

1a4pa.pdb              49  -LAVDKIMKDLDQC--RDGKVGFQSFFSLIAGLTIACND----YFVVHMKQ--------   92
1cb1.pdb               48  --TLDDLFQELDKN--GDGEVSFEEFQVLVKKISQ------------------------   78
1cnpa.pdb              51  --AEIVKLMDDL-DRNKDQEVNFQEYITFLGALAMIYNEALKG----------------   90
1mho.pdb               51  -EVVDKVMETLDSD--GDGECDFQEFMAFVAMITTACHE----FF--------------   88
1psra.pdb              52  -NYLADVFEKKDKN--EDKKIDFSEFLSLLGDIATDYHK----QSHG-A--APCSGGSQ  100
4icb.pdb               45  S-TLDELFEELDKN--GDGEVSFEEFQVLVKKISQ------------------------   76
                                      d     D    F ef                                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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