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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:17:45 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/SLT.html
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#====================================
# Aligned_structures: 2
#   1: 154l.pdb
#   2: 1qsaa.pdb
#
# Length:        229
# Identity:       27/229 ( 11.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     27/229 ( 11.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          105/229 ( 45.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


154l.pdb                1  RTDCYGNVNRIDTTGASCKTAKPEGLSYCGVSASKKIAERDLQAMDRYKTIIKKVGEKLC   60
1qsaa.pdb               1  ---------------------------------------------LAYNDLFKRYTSGKE   15
                                                                          Y    K       

154l.pdb               61  VEPAVIAGIISRESHAGKVLKNGWGDRGNGFGLMQVDKRSHK------PQGT------WN  108
1qsaa.pdb              16  IPQSYAMAIARQESAWNP---KVKSP-VGASGLMQIMPGTATHTVKMFSIPGYSSPGQLL   71
                                   I   ES                 GLMQ                         

154l.pdb              109  -GEVHITQGTTILINFIKTIQKKFPSWTKDQ-QLKGGISAYNAGAGNVR----------S  156
1qsaa.pdb              72  DPETNINIGTSYLQYVYQQFG----------NNRIFSSAAYNAGPGRVRTWLGNSAGRID  121
                             E  I  GT  L                          AYNAG G VR           

154l.pdb              157  YARMDIGTTHD-----DYANDVVARAQYYKQHG-Y--------------  185
1qsaa.pdb             122  AVAFVESIP--FSETRGYVKNVLAYDAYYRYFMGDKPTLMSATEWGRRY  168
                                            Y   V A   YY                    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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