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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:10:40 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/SCP.html
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#====================================
# Aligned_structures: 2
#   1: 1cfe.pdb
#   2: 1qnxa.pdb
#
# Length:        218
# Identity:       41/218 ( 18.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     41/218 ( 18.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           92/218 ( 42.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cfe.pdb                1  QN--------------------------------------------SPQDYLAVHNDARA   16
1qnxa.pdb               1  --AEAEFNNYCKIKCLKGGVHTACKYGSLKPNCGNKVVVSYGLTKQEKQDILKEHNDFRQ   58
                                                                           QD L  HND R 

1cfe.pdb               17  QVG-----------------VGPMSWDANLASRAQNYANSRAGDCN---LIHSGA-----   51
1qnxa.pdb              59  KIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWANQC-----QYGHDTCRDVAKYQ  113
                                                    W   LA  AQ  AN                     

1cfe.pdb               52  -GENLAKGGG----DFTGRAAVQLWVSERPSYNYATNQCVGGK--K-CRHYTQVVWRNSV  103
1qnxa.pdb             114  VGQNVALTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKF--SGNDFLKTGHYTQMVWANTK  171
                            G N A  G            V  W  E   YN        G       HYTQ VW N  

1cfe.pdb              104  RLGCGRARCNN---GWWFISCNYDPVGNWIGQRPY---  135
1qnxa.pdb             172  EVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEELYQTK  209
                             GCG               CNY P GN      Y   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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