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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:09:34 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/S1.html
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#====================================
# Aligned_structures: 2
#   1: 1ah9.pdb
#   2: 1sro.pdb
#
# Length:         86
# Identity:        8/ 86 (  9.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      8/ 86 (  9.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           25/ 86 ( 29.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ah9.pdb                1  AKED-----NIEMQGTVLETLPNTMFRVELENGHVVTAHISGKM-RKNYI-----RILTG   49
1sro.pdb                1  ----AEIEVGRVYTGKVTRIVDFGA-FVAIGGGKEGL-VHIS-QIADKRVEKVTDYLQMG   53
                                         G V          V    G                          G

1ah9.pdb               50  DKVTVEL--T-PYDL-SKGRIVFRSR   71
1sro.pdb               54  QEVPVKVLEVDRQG-RIRLSIKEA--   76
                             V V               I     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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