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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Aug 12 21:53:25 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/MUSTANG_HOMSTRAD/results/RuBisCO_large_NC.html
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#====================================
# Aligned_structures: 7
# 1: 1bwva.pdb
# 2: 1bxna.pdb
# 3: 1geha.pdb
# 4: 1gk8a.pdb
# 5: 1rbla.pdb
# 6: 5ruba.pdb
# 7: 8ruca.pdb
#
# Length: 528
# Identity: 67/528 ( 12.7%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 130/528 ( 24.6%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 147/528 ( 27.8%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1bwva.pdb 1 -RIKNSR------YESGVIPYA-KMGYWNPDYQ---V--K-DTDVLALFRVTPQPGVDPI 46
1bxna.pdb 1 ----------------------YKMGYWDGDYV---P--K-DTDLLALFRITPQDGVDPV 32
1geha.pdb 1 Y--------------------------VDKGYE---P--SKKRDIIAVFRVTPAEGYTIE 29
1gk8a.pdb 1 -------TKAGAGFKAGVKD--YRLTYYTPDYV---V--R-DTDILAAFRMTPQPGVPPE 45
1rbla.pdb 1 --------S-AAGYKAGVKD--YKLTYYTPDYT---P--K-DTDLLAAFRFSPQPGVPAD 43
5ruba.pdb 1 -------------------D--QSSRYVNLALKEEDLIAG-GEHVLCAYIMKPKAGYGYV 38
8ruca.pdb 1 --------A-SVEFKAGVKD--YKLTYYTPEYE---T--L-DTDILAAFRVSPQPGVPPE 43
y d la fr P G
1bwva.pdb 47 EAAAAVAGESSTATWTVVW-TDLLT---AA-DLYRAKAYKVDQVPNNPEQYFAYIAYELD 101
1bxna.pdb 33 EAAAAVAGESSTATWTVVW-TDRLT---AC-DMYRAKAYRVDPVPNNPEQFFCYVAYDLS 87
1geha.pdb 30 QAAGAVAAESSTGTWTT-LY--PWYEQERW-ADLSAKAYDFHDM-G-DGSWIVRIAYPFH 83
1gk8a.pdb 46 ECGAAVAAESSTGTWTTVW-TDGLT---SL-DRYKGRCYDIEPVPGEDNQYIAYVAY-ID 99
1rbla.pdb 44 EAGAAIAAESSTGTWTTVW-TDLLT---DM-DRYKGKCYHIEPVAGEENSYFAFIAYPLD 98
5ruba.pdb 39 ATAAHFAAESSTG-----------------TRGVDALVYEVDEA---R--ELTKIAYPVA 76
8ruca.pdb 44 EAGAAVAAESSTGTWTTVW-TDGLT---NL-DRYKGRCYHIEPVAGEENQYICYVAYPLD 98
aa A ESST Y AY
1bwva.pdb 102 LFE------EGSIANLTASIIGNVFGFKAVKALRLEDMRLPLAYLKTFQGPATGVILERE 155
1bxna.pdb 88 LFE------EGSIANLTASIIGNVFSFKPIKAARLEDMRFPVAYVKTFAGPSTGIIVERE 141
1geha.pdb 84 AFE------EANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRK 137
1gk8a.pdb 100 LFE------EGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVG-PHGIQVERD 152
1rbla.pdb 99 LFE------EGSVTNILTSIVGNVFGFKAIRSLRLEDIRFPVALVKTFQGPPHGIQVERD 152
5ruba.pdb 77 LFDRNITDGKAMIASFLTLTMGNNQGMGDVEYAKMHDFYVPEAYRALFDGPSVNISALWK 136
8ruca.pdb 99 LFE------EGSVTNMFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERD 152
lFe e si GN fg k rleD P a F G gi r
1bwva.pdb 156 RLDKF---GRPLLGCTTKPKLGLSGKNYGRVVYEALKGGLDFV-DDENINSQPFMRWRER 211
1bxna.pdb 142 RLDKF---GRPLLGATTKPKLGLSGRNYGRVVYEGLKGGLDFMKDDENINSQPFMHWRDR 198
1geha.pdb 138 MLEIK---DRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEER 194
1gk8a.pdb 153 KLNKY---GRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFT-DDENVNSQPFMRWRDR 208
1rbla.pdb 153 LLNKY---GRPMLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFQRWRDR 209
5ruba.pdb 137 VLGRPEVDGGLVVGTIIKPKLGLRPKPFAEACHAFWL-GGDFIKNDEPQGNQPFAPLRDT 195
8ruca.pdb 153 KLNKY---GRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFT-DDENVNSQPFMRWRDR 208
L gr G KPKlGls y l G Df dDEn sqpf r r
1bwva.pdb 212 YLFTMEAVNKASAATGEVKGHYLNVTAATMEEMYARANFAKELG----S-VIIMIDL-VI 265
1bxna.pdb 199 FLFVMDAVNKASAATGEVKGSYLNVTAGTMEEMYRRAEFAKSLG----S-VIIMVDL-IV 252
1geha.pdb 195 AEIMAKIIDKVENETGEKKTWFANITA-DLLEMEQRLEVLADLG----L-KHAMVDVVIT 248
1gk8a.pdb 209 FLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAV-AKELG----V-PIIMHDYLTG 262
1rbla.pdb 210 FLFVADAIHKSQAETGEIKGHYLNVTAPTCEEMMKRAEFAKELG----M-PIIMHDFLTA 264
5ruba.pdb 196 IALVADAMRRAQDETGEAKLFSANITADDPFEIIARGEYVLETFGENASHVALLVDGYVA 255
8ruca.pdb 209 FLFCAEALYKAQAETGEIKGHYLNATAGTCEDMMKRAVFARELG----V-PIVMHDYLTG 263
a k TGE K N TA em R lg m D
1bwva.pdb 266 GYTAIQTMAKWARDNDMILHLHRAGNSTYSR--QKNHGMNFRVICKWMRMAGVDHIHAGT 323
1bxna.pdb 253 GWTCIQSMSNWCRQNDMILHLHRAGHGTYTR--QKNHGVSFRVIAKWLRLAGVDHMHTGT 310
1geha.pdb 249 GWGALRYIRDLAADYGLAIHGHRAMHAAFTR--NPYHGISMFVLAKLYRLIGIDQLHVGT 306
1gk8a.pdb 263 GFTANTSLAIYCRDNGLLLHIHRAMHAVIDR--QRNHGIHFRVLAKALRMSGGDHLHSGT 320
1rbla.pdb 265 GFTANTTLAKWCRDNGVLLHIHRAMHAVIDR--QRNHGIHFRVLAKCLRLSGGDHLHSGT 322
5ruba.pdb 256 GAAAITTARRRFP--DNFLHYHRAGHGAVTSPQSK-RGYTAFVHCKMARLQGASGIHTGT 312
8ruca.pdb 264 GFTANTTLSHYCRDNGLLLHIHRAMHAVIDR--QKNHGMHFRVLAKALRLSGGDHIHSGT 321
G a lH HRA h r hG V K R G d H GT
1bwva.pdb 324 V--VGKLEGDPI-ITRGFYKTLLLPKLERNLQEGL-FFDMEWASLRKVMPVASGGIHAGQ 379
1bxna.pdb 311 A--VGKLEGDPL-TVQGYYNVCRDAYTQTDLTRGL-FFDQDWASLRKVMPVASGGIHAGQ 366
1geha.pdb 307 AEG------GKW-DVIQNARILRESHYKPDEND-VFHLEQKFYSIKAAFPTSSGGLHPGN 358
1gk8a.pdb 321 V--VGKLEGERE-VTLGFVDLMRDDYVEKDRSRGI-YFTQDW-SMPGVMPVASGGIHVWH 375
1rbla.pdb 323 V--VGKLEGDKA-STLGFVDLMREDHIEADRSRGV-FFTQDWASMPGVLPVASGGIHVWH 378
5ruba.pdb 313 ------------SSDRAIAYMLTQDEA-Q-----GPFYRQSWGGMKACTPIISGGMNALR 354
8ruca.pdb 322 V--VGKLEGERD-ITLGFVDLLRDDYTEKDRSRGI-YFTQSWVSTPGVLPVASGGIHVWH 377
q w s P SGG h
1bwva.pdb 380 MHQLIHYLGE-DVVLQFG-GGTIGHPDGIQAGATANRVALEAMILA-RNENRDYLTEGPE 436
1bxna.pdb 367 MHQLIHLFGD-DVVLQFG-GGTIGHPQGIQAGATANRVALEAMVLA-RNEGRDILNEGPE 423
1geha.pdb 359 IQPVIEALGT-DIVLQLG-GGTLGHPDGPAAGARAVRQAIDAIMQGI------------- 403
1gk8a.pdb 376 MPALVEIFGD-DACLQFG-GGTLGHPWGNAPGAAANRVALEACTQA-RNEGRDLAREGGD 432
1rbla.pdb 379 MPALVEIFGD-DSVLQFG-GGTLGHPWGNAPGATANRVALEACVQA-RNEGRDLYREGGD 435
5ruba.pdb 355 MPGFFENLGNANVILTAGGGA-FGHIDGPVAGARSLRQAWQAWRDGV------------- 400
8ruca.pdb 378 MPALTEIFGD-DSVLQFG-GGTLGHPWGNAPGAVANRVALEACVQA-RNEGRDLAREGNT 434
m G d Lq G Gg GHp G GA a R A A
1bwva.pdb 437 ILREAAKTCGALRTALDLWKDI------TFNY-------TSTDTSDFV 471
1bxna.pdb 424 ILRDAARWCGPLRAALDTWGDI-------------------------- 445
1geha.pdb 404 PLDEYAKTHKELARALEKWGH--------VTP---------------- 427
1gk8a.pdb 433 VIRSACKWSPELAAACEVWKEI------KFEF-------DTIDKL--- 464
1rbla.pdb 436 ILREAGKWSPELAAALDLWKEI------KFEF-------ETMDKL--- 467
5ruba.pdb 401 PVLDYAREHKELARAFESFPGDADQIYP-G--WRKALGV--------- 436
8ruca.pdb 435 IIREATKWSPELAAACEVWKEI------KFEF-------PAMDTV--- 466
L A w
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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