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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:08:08 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/RrnaAD.html
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#====================================
# Aligned_structures: 2
#   1: 1yub.pdb
#   2: 2erca.pdb
#
# Length:        262
# Identity:       98/262 ( 37.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     98/262 ( 37.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           44/262 ( 16.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1yub.pdb                1  MN-KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGK-GHLTTKLAKISKQVTSIE   58
2erca.pdb               1  --QNFIT-------SKHNIDKIMTNIRLNEHDNIFEI-GSGKGHFTLELVQRCNFVTAIE   50
                                I        S      I     L E D   EI     GH T  L      VT IE

1yub.pdb               59  -LDSHLFNLSSEKLKLN---------TRVTLIHQDILQ-FQFPNKQRYKIVGNIPYHL-S  106
2erca.pdb              51  IDHKLCKT---------TENKLVDHDN-FQVLNKDI-LQFKFPKNQSYKIFGNI-PYNIS   98
                                                             DI   F FP  Q YKI GNI     S

1yub.pdb              107  TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLHTQVSIQQLLKLPAEC--FHP  164
2erca.pdb              99  TDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLALFLMAEVDISILSMVPR--EYFHP  156
                           T II K VF S A  IYLIVE GF KR L   R L L L   V I  L   P     FHP

1yub.pdb              165  KPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQF-HQAMKHAKVNNL  223
2erca.pdb             157  KPKVNSSLIRLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTK-NQFNNSLKHAGIDDL  215
                           KPKVNS LI L R       K    Y YFV KWVN EY   FTK        KHA    L

1yub.pdb              224  STITYEQVLSIFNSYLLFNGRK  245
2erca.pdb             216  NNISFEQFLSLFNSYKLF-NK-  235
                             I  EQ LS FNSY LF    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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