################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:09:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ribosomal_L1.html
################################################################################################
#====================================
# Aligned_structures: 3
#   1: 1cjsa.pdb
#   2: 1dwua.pdb
#   3: 487dh.pdb
#
# Length:        249
# Identity:       39/249 ( 15.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    154/249 ( 61.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           62/249 ( 24.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cjsa.pdb               1  MDRE----------------ALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRI   44
1dwua.pdb               1  MDRE----------------NILKAVKEARSLAKPRNFTQSLDLIINLKELDLSRPENRL   44
487dh.pdb               1  ----KRYRALLEKVDPNKIYTIDEAAHLVKE-LATAKFDETVEV-HAKLGIDPRRSDQNV   54
                                                il Avkeare akprnFtqs e    lkeiD rrpenr 

1cjsa.pdb              45  KTEVVLPHGRGK----EAKIAVIGTGDLAKQAEELGLT-VIRKEEIEELGKNKRKLRKIA   99
1dwua.pdb              45  KEQVVLPNGRGK----EPKIAVIAKGDLAAQAEEMGLT-VIRQDELEELGKNKKMAKKIA   99
487dh.pdb              55  RGTVSLPH----GLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDG--------  102
                           k  VvLPh        e kiavIakGdlakqAEE Glt Vir eeieelgkn        

1cjsa.pdb             100  -KAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPAN------ANIKPLVERLKK-TVV  151
1dwua.pdb             100  -NEHDFFIAQADMMPLVGKTLGPVLGPRGKMPQPVPAN------ANLTPLVERLKK-TVL  151
487dh.pdb             103  WMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNP----KAGTVGFNIGEIIREIKAGRIE  158
                              hDffiAqaD MplvG  lG iLGPRGkmP P          aNi plverlKk tv 

1cjsa.pdb             152  INTRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGL-----YHIKDAYVKLTMG  206
1dwua.pdb             152  INTRDKPLFHVLVGNEKMSDEELAENIEAILNTVSRKYEKGL-----YHVKSAYTKLTMG  206
487dh.pdb             159  FRNDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKP---EGAKGTFLRSVYVTTTMG  215
                           intrdkp fhvlVGnekm dE ladNIeA ln v  kye        yh ksaYvklTMG

1cjsa.pdb             207  PAVKVK---  212
1dwua.pdb             207  PPAQIEK--  213
487dh.pdb             216  PSVRINPHS  224
                           P v i    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################