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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:02:29 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ribonuclease_P.html
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#====================================
# Aligned_structures: 2
#   1: 1a6f.pdb
#   2: 1d6ta.pdb
#
# Length:        118
# Identity:       55/118 ( 46.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     55/118 ( 46.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            6/118 (  5.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a6f.pdb                1  A-HLKKRNRLKKNEDFQKVFKHGTSVANRQFVLYTLDQPENDELRVGLSVSKKIGNAVMR   59
1d6ta.pdb               1  -MLLEKAYRIKKNADFQRIYKKGHSVANRQFVVYTCNNKEIDHFRLGISVSKKLGNAVLR   59
                              L K  R KKN DFQ   K G SVANRQFV YT    E D  R G SVSKK GNAV R

1a6f.pdb               60  NRIKRLIRQAFLEEKERLKEKDYIIIARKPASQLTYEETKKSLQHLFRKSSLYK----  113
1d6ta.pdb              60  NKIKRAIRENFKVHKSHILAKDIIVIARQPAKDMTTLQIQNSLEHVLKIAKVFNKKIK  117
                           N IKR IR  F   K     KD I IAR PA   T      SL H             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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