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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:34:37 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Prismane.html
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#====================================
# Aligned_structures: 2
#   1: 1gnla.pdb
#   2: 1gnta.pdb
#
# Length:        560
# Identity:      357/560 ( 63.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    357/560 ( 63.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           24/560 (  4.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gnla.pdb               1  SNAMFCYQCQETVGNKGCTQVGVCGKKPETAALQDALIYVTKGLGQIATRLRAEGKAVDH   60
1gnta.pdb               1  ---MFCFQCQETAKNTGCTVKGMCGKPEETANLQDLLIFVLRGIAIYGEKLKELGQPDR-   56
                              MFC QCQET  N GCT  G CGK  ETA LQD LI V  G       L   G     

1gnla.pdb              61  RIDRLVTGNLFATITNANFDDDILAERVRMTCAAKKELAASL-T---------DKSGLSD  110
1gnta.pdb              57  SNDDFVLQGLFATITNANWDDARFEAMISEGLARRDKLRNAFLAVYKAKNGKDFSEPLP-  115
                             D  V   LFATITNAN DD           A    L                   L  

1gnla.pdb             111  AALWEASEKSAMLAKAGTVGVMATTDDDVRSLRWLITFGLKGMAAYAKHADVLGKHENSL  170
1gnta.pdb             116  EAATWTGDSTAFAEKAKSVGILATENEDVRSLRELLIIGLKGVAAYAEHAAVLGFRKTEI  175
                            A        A   KA  VG  AT   DVRSLR L   GLKG AAYA HA VLG      

1gnla.pdb             171  DAFMQEALAKTLDDSLSVADLVALTLETGKFGVSAMALLDAANTGTYGHPEITKVNIGVG  230
1gnta.pdb             176  DEFMLEALASTTKD-LSVDEMVALVMKAGGMAVTTMALLDEANTTTYGNPEITQVNIGVG  234
                           D FM EALA T  D LSV   VAL    G   V  MALLD ANT TYG PEIT VNIGVG

1gnla.pdb             231  SNPGILISGHDLRDLEMLLKQTEGTGVDVYTHSEMLPAHYYPAFKKYAHFKGNYGNAWWK  290
1gnta.pdb             235  KNPGILISGHDLKDMAELLKQTEGTGVDVYTHGEMLPANYYPAFKKYPHFVGNYGGSWWQ  294
                            NPGILISGHDL D   LLKQTEGTGVDVYTH EMLPA YYPAFKKY HF GNYG  WW 

1gnla.pdb             291  QKEEFESFNGPVLLTTNCLVPPKDSY--KDRVYTTGIVGFTGCKHIPGEI--GEHKDFSA  346
1gnta.pdb             295  QNPEFESFNGPILLTTNCLVPLKKENTYLDRLYTTGVVGYEGAKHIAD-RPAGGAKDFSA  353
                           Q  EFESFNGP LLTTNCLVP K      DR YTTG VG  G KHI      G  KDFSA

1gnla.pdb             347  IIAHAKTCPAPTEIESGEIIGGFAHNQVLALADKVIDAVKSGAIKKFVVMAGCDGRAKSR  406
1gnta.pdb             354  LIAQAKKCPPPVEIETGSIVGGFAHHQVLALADKVVEAVKSGAIKRFVVMAGCDGRQKSR  413
                            IA AK CP P EIE G I GGFAH QVLALADKV  AVKSGAIK FVVMAGCDGR KSR

1gnla.pdb             407  SYYTDFAEGLPKDTVILTAGCAKYRYNKLNLGDIGGIPRVLDAGQCNDSYSLAVIALKLK  466
1gnta.pdb             414  SYYTEVAENLPKDTVILTAGCAKYRYNKLNLGDIGGIPRVLDAGQCNDSYSLAVIALKLK  473
                           SYYT  AE LPKDTVILTAGCAKYRYNKLNLGDIGGIPRVLDAGQCNDSYSLAVIALKLK

1gnla.pdb             467  EVFGLEDVNDLPIVYNIAWYEQKAVIVLLALLSLGVKNIHLGPTLPAFLSPNVAKVLVEQ  526
1gnta.pdb             474  EVFGLDDINDLPVSYDIAWYEQKAVAVLLALLFLGVKGIRLGPTLPAFLSPNVAKVLVEN  533
                           EVFGL D NDLP  Y IAWYEQKAV VLLALL LGVK I LGPTLPAFLSPNVAKVLVE 

1gnla.pdb             527  FNIGGITSPQDDLKAFF---  543
1gnta.pdb             534  FNIKPIGTVQDDIAAMMAGK  553
                           FNI  I   QDD  A     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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