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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 08:44:30 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_M24.html
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#====================================
# Aligned_structures: 4
#   1: 1az9.pdb
#   2: 1chma.pdb
#   3: 1xgsa.pdb
#   4: 2mata.pdb
#
# Length:        388
# Identity:       13/388 (  3.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     45/388 ( 11.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          189/388 ( 48.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1az9.pdb                1  ---FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHG-----ARY   52
1chma.pdb               1  --MIKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVE   58
1xgsa.pdb               1  -------MDTEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELG-----GKP   48
2mata.pdb               1  AISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQH----AVS   56
                                  e     r ag ia            pg    el                    

1az9.pdb               53  PSY---------NTIVGSGENGCILHYTE---NECEMRDGDLVLIDAGCEYKGYAGDITR  100
1chma.pdb              59  LMDT--------WTWFQSGINTDGAHNPV---TTRKVNKGDILSLNCFPMIAGYYTALER  107
1xgsa.pdb              49  A--F--------PVNLSINEIA--AHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAV   96
2mata.pdb              57  A--CLGYHGYPKSVCISINEVV--CHGIPD--DAKLLKDGDIVNIDVTVIKDGFHGDTSK  110
                                              e     H             GD   id      G   d   

1az9.pdb              101  TFPVNGKF-TQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKG  159
1chma.pdb             108  TLF-LDHC-SDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHD--------  157
1xgsa.pdb              97  TVR-VGMEE----DELMEAAKEALNAAISVARAGVEIKELGKAIENEIRKRG--------  143
2mata.pdb             111  MFI-VGKP-TIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEG--------  160
                           t    g         l     E l   l    pG    e                     

1az9.pdb              160  DVDELIAQNAHR-----PFFMHGLSHWLGL-DV-HDVG---VYG----QDRSRILEPGMV  205
1chma.pdb             158  ------------VL---QYRTFGYGHSFGT-L-SHYYGREAGLELR--EDIDTVLEPGMV  198
1xgsa.pdb             144  ------------FKPIV----NLSGHKIERYKL-HAGI---SIPNIYRPHDNYVLKEGDV  183
2mata.pdb             161  ------------FSVVR----EYCGHGIGQ-GF-HEEP---QVLHYDSRETNVVLKPGMT  199
                                                   gH  g     H                  vL pGmv

1az9.pdb              206  LTVEPGLYIAPDA----------------------------------------EV-----  220
1chma.pdb             199  VSMEPMIMLPEGL-----------------------------------------------  211
1xgsa.pdb             184  FAIEPFATIG--AGQVIEVPPTLIYMYVRDVPVRVAQARFLLAKIKREYGTLP-FAYRWL  240
2mata.pdb             200  FTIEPMVNAG--KKEIRTMKDG--------------------------------------  219
                              EP                                                       

1az9.pdb              221  ------PEQY----------R--------------GIGIRIEDDIVITETGNENLTAS--  248
1chma.pdb             212  -------------------PG--------------AGGYREHDILIVNENGAENIT-K--  235
1xgsa.pdb             241  QNDMPEGQLKLALKTLEKA-GAIYGYPVLKEIRN-GIVAQFEHTIIVEKDSVIVTTE---  295
2mata.pdb             220  -----------------------WTVKTKD----RSLSAQYEHTIVVTDNGCEILTLRKD  252
                                                                    e  i v   g e  T    

1az9.pdb              249  VV--------KKPEEIEALMVAARKQ--  266
1chma.pdb             236  FP--------YGPEKNI---------IR  246
1xgsa.pdb                  ----------------------------     
2mata.pdb             253  DTIPAIISHD------------------  262
                                                       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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