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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:11:44 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_M17.html
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#====================================
# Aligned_structures: 2
#   1: 1gyta.pdb
#   2: 1lam.pdb
#
# Length:        331
# Identity:      135/331 ( 40.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    135/331 ( 40.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           13/331 (  3.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gyta.pdb               1  IAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAV   60
1lam.pdb                1  FASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSV   60
                            A G   A  L   P N       A        S S              E  M S L V

1gyta.pdb              61  GQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAA  120
1lam.pdb               61  AKGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAAT  120
                             GS        I YKG       P V VGKG TFDSGGISIK    MD M  DM GAA 

1gyta.pdb             121  VYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVL  180
1lam.pdb              121  ICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLIL  180
                                   A L LPIN  G    CENMP G A  PGDV     G T  V NTDAEGRL L

1gyta.pdb             181  CDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWR  240
1lam.pdb              181  ADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWR  240
                            D L Y   F P   I  ATLTGA  IALG   TG   N   L   L  AS   GDR WR

1gyta.pdb             241  LPLGDEYQEQL-ESNFADMANIG-GRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRS--  296
1lam.pdb              241  MPLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTN-KD  299
                            PL   Y  Q      AD  NIG  R  GA TA  FL  F     WAHLDIAG       

1gyta.pdb             297  --GK-AKGATGRPVALLAQFLLNRAGFNGEE  324
1lam.pdb              300  EVPYLRKGMAGRPTRTLIEFLFRFSQ-----  325
                                 KG  GRP   L  FL          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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