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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:54:28 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PX.html
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#====================================
# Aligned_structures: 2
#   1: 1gd5a.pdb
#   2: 1h6ha.pdb
#
# Length:        164
# Identity:       27/164 ( 16.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     27/164 ( 16.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           55/164 ( 33.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gd5a.pdb               1  GS---------------MGDTFIRHIALLGFEKRFVP--SQHYVYMFLVKWQDLSEKVVY   43
1h6ha.pdb               1  --AVAQQLRAESDFEQLPD-DVAISANIADIEEKR--GFTSHFVFVIEVKTKGGSKYLIY   55
                                                          E         H V    VK    S    Y

1gd5a.pdb              44  RRFTEIYEFHKTLKEMFPIEAGAINPE--------NRIIPHLPAPKWFD-----GQRAAE   90
1h6ha.pdb              56  RRYRQFHALQSKLEERFG---------PDSKSSALACTLPTLPAKV---YVGVKQE-IAE  102
                           RR          L E F                      P LPA              AE

1gd5a.pdb              91  NRQGTLTEYCSTLMSLPTKISR-CPHLLDFFKVRPDDLKLP---  130
1h6ha.pdb             103  MRIPALNAYMKSLLS-LPVWVLMDEDVRIFFYQSPYDSE--QVP  143
                            R   L  Y   L S              FF   P D       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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