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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:07:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PTB.html
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#====================================
# Aligned_structures: 3
#   1: 1aqca.pdb
#   2: 1shca.pdb
#   3: 2nmba.pdb
#
# Length:        213
# Identity:       11/213 (  5.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     47/213 ( 22.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          114/213 ( 53.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aqca.pdb               1  ------ED----------L-IDGIIFAANYLGSTQLLSDKTPS-KNV--RQAQEAVSRIK   40
1shca.pdb               1  --------TRGWLHPNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVC   52
2nmba.pdb               1  SKPHQW------QADEEAVRSATCSFSVKYLGCVEVFE-SR------GMQVCEEALKVLR   47
                                             v   g sf v YlGcvevl   r        qv  EA s   

1aqca.pdb              41  AQKL---------------------------------TEVDLFILTQRIKVLNADTQET-   66
1shca.pdb              53  E---AV-PGAKGATRRRKPCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQI-  107
2nmba.pdb              48  Q---SRR----------------------------RPVRGLLHVSGDGLRVVDDETKGLI   76
                                                                    L vst  l v  adtk   

1aqca.pdb              67  -DH----PLRTISYIADI----G---NIVVLARRRYK--------ICHVFES----EDAQ  102
1shca.pdb             108  ---IANHHMQSISFASGGDPDTA---EYVAYVA----KD-PVNQRACHILEC--PEGLAQ  154
2nmba.pdb              77  VDQ----TIEKVSFCAPD----RNHERGFSYIC----RDGTTRRWMCHGFLACKD-S-GE  122
                                      iSf a            v y               CH fe       aq

1aqca.pdb             103  LIAQSIGQAFSVAYQ----------EFLR----  121
1shca.pdb             155  DVISTIGQAFELRFK--------------QYLR  173
2nmba.pdb             123  RLSHAVGCAFAVCLERKQRRTRAAA--------  147
                                iGqAF v                     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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