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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sun Jul 24 01:34:59 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PH.html
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#====================================
# Aligned_structures: 13
#   1: 1b55a.pdb
#   2: 1bak.pdb
#   3: 1btn.pdb
#   4: 1dbha.pdb
#   5: 1dro.pdb
#   6: 1dyna.pdb
#   7: 1faoa.pdb
#   8: 1fgya.pdb
#   9: 1fhoa.pdb
#  10: 1foea.pdb
#  11: 1mai.pdb
#  12: 1pls.pdb
#  13: 1qqga.pdb
#
# Length:        337
# Identity:        0/337 (  0.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      1/337 (  0.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          275/337 ( 81.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b55a.pdb               1  ------------------------------------------------A-AVILESIFLK   11
1bak.pdb                1  ---G---------------------------------S-H--M-G-K---DCIMHGYMSK   16
1btn.pdb                1  -----------------------------------------------------MEGFLNR    7
1dbha.pdb               1  ----------AIKKNEIQKN-IDG-----WEGKDIG----QCC--N-----EFIEGTLTR   33
1dro.pdb                1  ---G----------------------------------SG---TG--A--GEGHEGYVTR   16
1dyna.pdb               1  ------------------------------------------------I-LVIRKGWLTI   11
1faoa.pdb               1  --PSL----------------------------------------------GTKEGYLTK   12
1fgya.pdb               1  -----T-F----------------------------------------F-NPDREGWLLK   13
1fhoa.pdb               1  ---M---------------------------------G-D--T-G-K-LGRIIRHDAFQV   18
1foea.pdb               1  ---------------EFGAVFDQ-LIAEQTGEK---KE--VAD--LS-G-DLLLHTSVIW   35
1mai.pdb                1  ------GLQD-----------DP-DLQAL-----------------------LKGSQLLK   19
1pls.pdb                1  ME----------------------------------------------P-KRIREGYLVK   13
1qqga.pdb               1  --------------------------------------------------DVRKVGYLRK   10
                                                                                       

1b55a.pdb              12  RSQQK-KKT----SP------L-----NFKKRLFLLT--V-------HKLSYYE--Y-DF   43
1bak.pdb               17  MGN-PF--------L------T-----QWQRRYFYLF--P-------NRLEWRG-EG---   43
1btn.pdb                8  KHEWE-------AHN--KKA-S---SRSWHNVYCVIN--N-------QEMGFYK--D---   40
1dbha.pdb              34  VG-------------------------AKHERHIFLF--D-------GL-ICCK--S-NH   55
1dro.pdb               17  KHE-W------DST--TKKASN---R-SWDKVYMAAK--A-------GRISFYK--D---   49
1dyna.pdb              12  NN----I--GIM-------------KGGSKEYWFVLT--A-------ENLSWYK--D---   38
1faoa.pdb              13  QGG------------------L---VKTWKTRWFTLH--R-------NELKYFK--D---   37
1fgya.pdb              14  LGG------------------R---VKTWKRRWFILT--D-------NCLYYFE--Y---   38
1fhoa.pdb              19  W-E-GD--------E------P------PKLRYVFLF--R-------NKIMFTE-QDAST   46
1foea.pdb              36  LN----P-------PA-----SLGKWKKEPELAAFVF--K-------TAVVLVYKDG-SK   69
1mai.pdb               20  VK------------SS-----S-----WRRERFYKLQEDC-------KTIWQES-RK-V-   47
1pls.pdb               14  KGS----------V-----------FNTWKPMWVVLL--E-------DGIEFYK--K---   38
1qqga.pdb              11  PK-------------------------SMHKRFFVLR--AASEAGGPARLEYYE--N---   38
                                                                                       

1b55a.pdb              44  ------------------ERGR--------RGS--KKG----SIDVEKI-TCVET-----   65
1bak.pdb               44  -----EA-------------------------P--Q-S----LLTMEEI-QSVEE-----   60
1btn.pdb               41  --------------------AK--SAAS--GIPYHSEV----PVSLKEA--ICEV-----   65
1dbha.pdb              56  -----GQP---RL-PGASN---A-------EYR--L-KEKFF----R-K-VQIND-----   82
1dro.pdb               50  --------------------QK--GYKSNPELTFRGEP----SYDLQNA--AIEI-----   76
1dyna.pdb              39  --------------------DE--E------KE--KKY----MLSVDNL--KLRD-----   57
1faoa.pdb              38  --------------------QM--S------PE--PIR----ILDLTEC-SAVQF-----   57
1fgya.pdb              39  --------------------TT--D------KE--PRG----IIPLENL--SIRE-----   57
1fhoa.pdb              47  S----PP----------S----Y---------T--HYS----SIRLDKY-N-IRQ-----   66
1foea.pdb              70  -QKKKLVGSHRL-SIYEEW---D-------PFR--F-R----HIPTEAL-QVRAL-----  104
1mai.pdb               48  -----MRS--------------PE-----------S-Q----LFSIEDIQEVRMGHRTEG   72
1pls.pdb               39  --------------------KS--D------NS--PKG----MIPLKGS--TLTS-----   57
1qqga.pdb              39  --------------------EK--KWRHK-SSA--PKR----SIPLESC-FNINK-----   63
                                                                                       

1b55a.pdb              66  ---------V-V-PEKNPPPER-QIPRRMEQISIIE-RF-PYPFQVVYD-----------  100
1bak.pdb               61  ---------T---Q-I--------------------K--ERKCLLLKIR-G---------   75
1btn.pdb               66  ---------A-LDY----K------------------K-KKHVFKLRLS-D---------   82
1dbha.pdb              83  ---------K---DDTN--------------------E-YKHAFEIILK-D---------   99
1dro.pdb               77  ---------A-SDY----T------------------K-KKHVLRVKLA-N---------   93
1dyna.pdb              58  ---------V-E-KGF--M------------------S-SKHIFALFNT-E----Q-RNV   79
1faoa.pdb              58  ---------D-Y-S----Q------------------E-RVNCFCLVFP-F---------   73
1fgya.pdb              58  ---------V-L-D----P------------------R-KPNCFELYN--P--S-H-KGQ   77
1fhoa.pdb              67  ---------H---T----------------------T--DEDTIVLQPQEP------G--   82
1foea.pdb             105  ---------P---S-AD-------------------AE-ANAVCEIVHV-KSESEGRP--  128
1mai.pdb               73  LEKFARDIP------------------------------EDRCFSIVFK-D------Q--   93
1pls.pdb               58  ---------PCQD-----F--GK----------------RMFVFKITTT-K---------   75
1qqga.pdb              64  ---------R-A-D----S------------------K-NKHLVALYT--R---------   78
                                                                                       

1b55a.pdb             101  -----------------E-GPLYVFS--P--TEELRKRWIHQLKNVI-RYNSD---L--V  132
1bak.pdb               76  -----------------G-KQFILQC--D--SDPELVQWKKELRDAY-REAQ--Q-L---  106
1btn.pdb               83  -----------------G-NEYLFQA--K--DDEEMNTWIQAISSA--------------  106
1dbha.pdb             100  -----------------E-NSVIFSA--K--SAEEKNNW-AALISLQ-YRST-L------  128
1dro.pdb               94  -----------------G-ALFLLQA--H--DDTEMSQWVTSLKAQSDST-------A--  122
1dyna.pdb              80  Y--------------K-DYRQLELAC--E--TQEEVDSWKASFLRAGV----------YP  110
1faoa.pdb              74  -------------------RTFYLCA--K--TGVEADEWIKILRWKL-SQI---------  100
1fgya.pdb              78  VIKACKTEADGRVVEGNH-VVYRISA--P--SPEEKEEW-KSIKASI-SRDP---FY---  124
1fhoa.pdb              83  -----------------L-PSFRIKPKDFETSEYVRKAWLRDIAEEQ-EKYA--A-----  116
1foea.pdb             129  -----------------E-RVFHLCC--S--SPESRKDFLKSVHSIL-RDKH--R-R---  159
1mai.pdb               94  -----------------R-NTLDLIA--P--SPADAQHWVQGLRKII-H-----------  119
1pls.pdb               76  -----------------Q-QDHFFQA--A--FLEERDAWVRDINKAI-KCIE--G-L---  106
1qqga.pdb              79  -----------------D-EHFAIAA--D--SEAEQDSWYQALLQLH-------------  103
                                                                 w                     

1b55a.pdb             133  -QKYHPCFWIDGQYL---CCSQTAKNAMGCQI-LEN-  163
1bak.pdb              107  VQ----RVPKMK-NKPRS-------------------  119
1btn.pdb                   -------------------------------------     
1dbha.pdb                  -------------------------------------     
1dro.pdb                   -------------------------------------     
1dyna.pdb             111  -E-R--------------------------------V  113
1faoa.pdb                  -------------------------------------     
1fgya.pdb             125  --------------------------------D----  125
1fhoa.pdb             117  -------------ER---D------------------  119
1foea.pdb             160  Q------------------------------------  160
1mai.pdb                   -------------------------------------     
1pls.pdb              107  E-------------------------HHHHHH-----  113
1qqga.pdb                  -------------------------------------     
                                                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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