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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:24:52 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PGM_PMM_NC.html
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#====================================
# Aligned_structures: 2
#   1: 1kfqa.pdb
#   2: 3pmga.pdb
#
# Length:        594
# Identity:      293/594 ( 49.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    293/594 ( 49.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           56/594 (  9.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1kfqa.pdb               1  QQVIPAPRVQVTQPYAGQKPGTSGLRKKVSEAT-QPNYLENFVQSIFNTLRKDELKPKNV   59
3pmga.pdb               1  ----VKIVTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQE-AT   55
                                      T  Y  QKPGTSGLRK V       NY ENF QSI  T           

1kfqa.pdb              60  LFVGGDGRYFNRQAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIRKVNEEVGNCIGG  119
3pmga.pdb              56  LVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIK-----AIGG  110
                           L VGGDGR     AI  I R A AN I     GQ G  STPA S  IRK        IGG

1kfqa.pdb             120  IILTASHNPGGKEHGDFGIKFNVRTGAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHINL  179
3pmga.pdb             111  IILTASHN-PGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPD-LK--VDL  166
                           IILTASHN  G   GDFGIKFN   G PAPE  TD I      I EY            L

1kfqa.pdb             180  DQIGVYKFEGTRLEK-SHFEVKVVDTVQDYTQLMQKLFDFDLLKGLFSNKD-FSFRFDGM  237
3pmga.pdb             167  GVLGKQQFDLEN--KFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAM  224
                              G   F      K   F V  VD V  Y       FDF  LK L S       R D M

1kfqa.pdb             238  HGVAGPYAKHIFGTLLGCSKESLLNCDPSEDFGGGHPDPNLTYAHDLVELLDIHKKKDVG  297
3pmga.pdb             225  HGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMK--------  276
                           HGV GPY K I    LG    S  NC P EDFGG HPDPNLTYA DLVE           

1kfqa.pdb             298  T--VPQFGAACDGDADRNMILGRQ-FFVTPSDSLAVIAANANLI--F-KNGLLGAARSMP  351
3pmga.pdb             277  -SGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMP  335
                                 FGAA DGD DRNMILG   FFV PSDS AVIAAN   I  F   G  G ARSMP

1kfqa.pdb             352  TSGALDKVAAKNGIKLFETPTGWKFFGNLMDAGLINLCGEESFGTGSNHIREKDGIWAVL  411
3pmga.pdb             336  TSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVL  395
                           TSGALD VA    I L ETPTGWKFFGNLMDA    LCGEESFGTGS HIREKDG WAVL

1kfqa.pdb             412  AWLTILAHKNKNTDHFVTVEEIVTQYWQQFGRNYYSRYDYEQVDSAGANKMMEHLKTKFQ  471
3pmga.pdb             396  AWLSILATRK------QSVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMF  449
                           AWL ILA           VE I    W  FGRN   RYDYE V   GA KMM  L     

1kfqa.pdb             472  Y--FEQLKQG----------NKADIYDYVDPVDQSVSKNQGVRFVFGDGSRIIFRLSGTG  519
3pmga.pdb             450  DRSFVGKQ--FSANDKVYTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTG  507
                              F                 KAD   Y DPVD SVSKNQG R  F DGSRIIFRLSGTG

1kfqa.pdb             520  SVGATIRIYFEQFEQQ--QIQHETATALANIIKLGLEISDIAQFTGRNEPTVIT  571
3pmga.pdb             508  SAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT  561
                           S GATIR Y    E     I       LA  I   L  S     TGR  PTVIT


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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