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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:24:43 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PGM_PMM_II.html
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#====================================
# Aligned_structures: 2
#   1: 1kfqa.pdb
#   2: 3pmga.pdb
#
# Length:        122
# Identity:       59/122 ( 48.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     59/122 ( 48.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           13/122 ( 10.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1kfqa.pdb               1  VQDYTQLMQKLFDFDLLKGLFSNKD-FSFRFDGMHGVAGPYAKHIFGTLLGCSKESLLNC   59
3pmga.pdb               1  VEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNC   60
                           V  Y       FDF  LK L S       R D MHGV GPY K I    LG    S  NC

1kfqa.pdb              60  DPSEDFGGGHPDPNLTYAHDLVELLDIHKKKDVGT--VPQFGAACDGDADRNMILGRQFF  117
3pmga.pdb              61  VPLEDFGGHHPDPNLTYAADLVETMK---------SGEHDFGAAFDGDGDRNMILGKHGF  111
                            P EDFGG HPDPNLTYA DLVE                 FGAA DGD DRNMILG   F

1kfqa.pdb             118  V-  118
3pmga.pdb             112  FV  113
                             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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