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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:24:18 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PGM_PMM.html
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#====================================
# Aligned_structures: 2
#   1: 1kfqa.pdb
#   2: 3pmga.pdb
#
# Length:        143
# Identity:       67/143 ( 46.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     67/143 ( 46.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           16/143 ( 11.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1kfqa.pdb               1  RNYYSRYDYEQVDSAGANKMMEHLKTKFQY--FEQLKQG----------NKADIYDYVDP   48
3pmga.pdb               1  RNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQ--FSANDKVYTVEKADNFEYHDP   58
                           RN   RYDYE V   GA KMM  L        F                 KAD   Y DP

1kfqa.pdb              49  VDQSVSKNQGVRFVFGDGSRIIFRLSGTGSVGATIRIYFEQFEQQ--QIQHETATALANI  106
3pmga.pdb              59  VDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPL  118
                           VD SVSKNQG R  F DGSRIIFRLSGTGS GATIR Y    E     I       LA  

1kfqa.pdb             107  IKLGLEISDIAQFTGRNEPTVIT  129
3pmga.pdb             119  ISIALKVSQLQERTGRTAPTVIT  141
                           I   L  S     TGR  PTVIT


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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