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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:56:00 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PCNA.html
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#====================================
# Aligned_structures: 2
#   1: 1axca.pdb
#   2: 1plq.pdb
#
# Length:        261
# Identity:       87/261 ( 33.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     87/261 ( 33.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           15/261 (  5.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1axca.pdb               1  MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY   60
1plq.pdb                1  MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEY   60
                           M EA     S  K      KD            G   Q  D S V LV L    E F  Y

1axca.pdb              61  RCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAP--EKVSDYEMKLMD  118
1plq.pdb               61  RCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMD  120
                           RCD     G  LTS SKIL C  N D  TL A    D   L FE         Y  KLMD

1axca.pdb             119  LDVEQLG-IPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGN  177
1plq.pdb              121  IDADFLKIEE-LQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGS  179
                            D   L       Y      PS EF  I RDLS   D   I   K   KF A G  G G 

1axca.pdb             178  IKLSQTS-----EEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVE  232
1plq.pdb              180  VIIKPF-VDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQ  238
                                        E     EM  PV LTF   YL    K   LS  V    S   P    

1axca.pdb             233  YKIADMGHLKYYLAPKI----  249
1plq.pdb              239  FDLK-SGFLQFFLAPKFNDEE  258
                                 G L   LAPK     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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