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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:55:45 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PCMT.html
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#====================================
# Aligned_structures: 2
#   1: 1dl5a.pdb
#   2: 1jg1a.pdb
#
# Length:        225
# Identity:       68/225 ( 30.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     68/225 ( 30.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           22/225 (  9.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dl5a.pdb               1  ------MREKLFWILKK-YG--VSDHIAKAFLEIPREEFLTKSY-PLSYVYEDIVLVSYD   50
1jg1a.pdb               1  EKELYEKWMRTVEMLKAEG-IIRSKEVERAFLKYPRYLSVED--KYKKYAHIDEPLPIP-   56
                                         LK       S     AFL  PR            Y   D  L    

1dl5a.pdb              51  DGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR  110
1jg1a.pdb              57  ---AGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIP  111
                                 T S P   A   E   L  GM  LE G G G NAA  S  V     V   E   

1dl5a.pdb             111  KICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGR  170
1jg1a.pdb             112  ELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGK  171
                              E AKRN ER G  NV    GDG  G P   PYDVI VT G    PE    QLK GG 

1dl5a.pdb             171  VIVPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGGNLG--  213
1jg1a.pdb             172  LIIPVGS-YHLWQELLEVRKTKDGIKIKNHGGVAFVPLIGEYGWK  215
                            I P        Q      K              F    G  G  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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