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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:52:35 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PAX.html
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#====================================
# Aligned_structures: 2
#   1: 1pdnc.pdb
#   2: 6paxa.pdb
#
# Length:        135
# Identity:       70/135 ( 51.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     70/135 ( 51.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           14/135 ( 10.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1pdnc.pdb               1  -QGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQET   59
6paxa.pdb               1  SHSGVNQLGGVFVNGRPLPDSTRQRIVELAHSGARPCDISRILQVSNGCVSKILGRYYAT   60
                               VNQLGGVF NGRPLP   R  IVE A  G RPC ISR L VS GCVSKIL RY  T

1pdnc.pdb              60  GSIRPGVIGGSKPRI-ATPEIENRIEEYK-RSSPGMFSWEIREKLIREGVCDRSTAPSVS  117
6paxa.pdb              61  GSIRPRAIG-GSKPRVATPEVVSKIAQYKQE-CPSIFAWEIRDRLLSEGVCTNDNIPSVS  118
                           GSIRP  IG       ATPE    I  YK    P  F WEIR  L  EGVC     PSVS

1pdnc.pdb             118  AISRLV---------  123
6paxa.pdb             119  SINRVLRNLASEKQQ  133
                            I R           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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