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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:29:22 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PARP.html
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#====================================
# Aligned_structures: 2
#   1: 1efya.pdb
#   2: 1gs0a.pdb
#
# Length:        222
# Identity:      113/222 ( 50.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    113/222 ( 50.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           12/222 (  5.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1efya.pdb               1  LRTDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQLHN   60
1gs0a.pdb               1  LHCALRPLDHESNEFKVISQYLQSTHAPTHKDYTMTLLDVFEVEKEGEKEAF-R-EDLPN   58
                           L       D  S E K I QY   THA TH  Y       F  E EGE         L N

1efya.pdb              61  RQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQADPI  120
1gs0a.pdb              59  RMLLWHGSRLSNWVGILSHGLRVAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNT  118
                           R LLWHGSR  N  GILS GLR APPEAP TGYMFGKGIYFADM SKSANYC  S     

1efya.pdb             121  GLILLGEVALGNMYELKNASHITKL----PKGKHSVKGLGKTAPDPTATTTLDGVEVPLG  176
1gs0a.pdb             119  GLLLLSEVALGQCNELLEANPK---AQGLLRGKHSTKGMGKMAPSPAHFITLNGSTVPLG  175
                           GL LL EVALG   EL  A            GKHS KG GK AP P    TL G  VPLG

1efya.pdb             177  NGISTGIND-T--CLLYNEYIVYDVAQVNLKYLLKLKFNYKT  215
1gs0a.pdb             176  PASDTGILNPEGYTLNYNEFIVYSPNQVRMRYLLKIQFNFLQ  217
                               TGI       L YNE IVY   QV   YLLK  FN   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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