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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:39:06 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Orn_DAP_Arg_deC.html
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#====================================
# Aligned_structures: 3
#   1: 1d7ka.pdb
#   2: 1f3ta.pdb
#   3: 7odca.pdb
#
# Length:        177
# Identity:       86/177 ( 48.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    118/177 ( 66.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           50/177 ( 28.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d7ka.pdb               1  -----EEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVAFTLAVNIIAKKIVLKEQT   55
1f3ta.pdb               1  -----------------------------------GDPFFVAFTLAVNVIAKKVT-----   20
7odca.pdb               1  SSFTKDEFDCHILDEGFTAKDILDQKIN------DKDAFYVAFTLAVNIIAKKTVW----   50
                                                              kDaFyVAFTLAVNiIAKK v     

1d7ka.pdb              56  EQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDERYYSSSIWGPTCDGLDRIVERC  115
1f3ta.pdb              21  -QSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERY   79
7odca.pdb              51  EQTFMYYVNDGVYGSFNCILYDHAHVKALLQKRPKPDEKYYSSSIWGPTCDGLDRIVERC  110
                            QtFMYYVNDGVYGSFNCILYDHAhVkpLlQkrPkPdEkyYsSSiWGPTCDGLDrIVERc

1d7ka.pdb             116  DLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPAWQLMQQFQNPDFPP  172
1f3ta.pdb              80  YLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVSG-LPDHVVR--------  127
7odca.pdb             111  NLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSR-PMWQLMK--------  158
                            LPEMhVGdWmLFEnMGAYTVaaaStFNGFQrPtIYYVmSg                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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