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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:44:00 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Orbi_VP7.html
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#====================================
# Aligned_structures: 2
#   1: 1ahsa.pdb
#   2: 1bvp1.pdb
#
# Length:        137
# Identity:       38/137 ( 27.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     38/137 ( 27.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           14/137 ( 10.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ahsa.pdb               1  -----TGPYAGAVEVQQSGRYYVP-QGRTRGGYINSNIAEVCMDAGAAGQVNALLAPRRG   54
1bvp1.pdb               1  PARQPYGFFLETEETFQPGRWFMRAAQAVTAVVCGPDMIQVSLNAGARGDVQQIFQG---   57
                                 G      E  Q GR                    V   AGA G V         

1ahsa.pdb              55  --DAVMIYFVWRPLRIFCDPQGASLESAPGTFVTVDGVNVAAGDVVAWNTIAPVNVGNPG  112
1bvp1.pdb              58  RNDPMMIYLVWRRIENFAMAQGNSQQTQAGVTVSVGGVDMRAGRIIAWDGQAALHVHNPT  117
                             D  MIY VWR    F   QG S     G  V V GV   AG   AW   A   V NP 

1ahsa.pdb             113  ARRSILQFEVLWYT---  126
1bvp1.pdb             118  QQNAMVQIQVVFYISMD  134
                                 Q  V  Y    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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