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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:43:15 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/OMPdecase.html
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#====================================
# Aligned_structures: 2
#   1: 1dbta.pdb
#   2: 1dqwa.pdb
#
# Length:        296
# Identity:       42/296 ( 14.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     42/296 ( 14.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           88/296 ( 29.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dbta.pdb               1  ---------------------------MKNNLPIIALDFASAEETLAFLAPFQQEPLFVK   33
1dqwa.pdb               1  MHKATYKERAATHPSPVAAKLFNIMHEKQ-TNLCASLDVRTTKELLELVEALGPKICLLK   59
                                                               LD     E L             K

1dbta.pdb              34  VGMELFYQ---------EGPSIVKQLKERN-CELFLDLKLHDIPTTVNKAMKR----LAS   79
1dqwa.pdb              60  THV-----DILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIA-  113
                                                  K L       LF D K  DI  TV           A 

1dbta.pdb              80  LGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKS  139
1dqwa.pdb             114  EWADITNAHGVVGPGIVSGLKQAAEEVTK---EPRGLLMLAELSC---------KGSLS-  160
                              D  N H   G           EE T        L     L                 

1dbta.pdb             140  LIDTVVHYSKQAEESG--LDGVVCSV-HEAKAIYQAVSPSFLTVTPGIRMSEDAA----N  192
1dqwa.pdb             161  TGEYTKGTVDIAKSDKDFVIGFIAQRDMG---GRDEG-YDWLIMTPGVGLD-DK-GDALG  214
                                      A        G                    L  TPG     D       

1dbta.pdb             193  DQVRVATPAIAREKGSSAIVVGRSITK--AEDPVKAYKAVRLEWEGI---------  237
1dqwa.pdb             215  QQ--YRTVDDVVSTGSDIIIVGRGLFAKGR-DAKVEGERYRKAGWEAYLRRCGQQD  267
                            Q    T       GS  I VGR        D        R               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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