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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:25:51 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Mu_DNA_bind.html
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#====================================
# Aligned_structures: 2
#   1: 1qpma.pdb
#   2: 1tnt.pdb
#
# Length:         77
# Identity:       27/ 77 ( 35.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     27/ 77 ( 35.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            9/ 77 ( 11.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1qpma.pdb               1  KSIWCSPQEIMAADGMPGSVAGVHYRANVQGWTKRKKEGVKGGKAVEYDVMSMPTKEREQ   60
1tnt.pdb                1  MELWVSPKELANLPGLPKTSAGVIYVAKKQGWQNRTRAGVKGGKAIEYNANSLPVEAKAA   60
                              W SP E     G P   AGV Y A  QGW  R   GVKGGKA EY   S P      

1qpma.pdb              61  VIAHLGLST--------   69
1tnt.pdb               61  LLLRQGE-IETSLGYFE   76
                                G           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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