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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:47:41 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MIF.html
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#====================================
# Aligned_structures: 3
#   1: 1dpta.pdb
#   2: 1gifa.pdb
#   3: 1mfia.pdb
#
# Length:        118
# Identity:       33/118 ( 28.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    109/118 ( 92.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            4/118 (  3.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dpta.pdb               1  -PFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL   59
1gifa.pdb               1  MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALC   60
1mfia.pdb               1  -PMFIVNTNVPRASVPEGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTNDPCALC   59
                            PmfivnTNvPrasVP GflseLtqqlAqatGKPaqyiaVhVvPdqlMafsGs ePCAlc

1dpta.pdb              60  SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL  117
1gifa.pdb              61  SLHSIGKI-GGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA--  115
1mfia.pdb              60  SLHSIGKI-GGAQNRNYSKLLCGLLSDRLHISPDRVYINYYDMNAANVGWNGSTFA--  114
                           SlhSIGki ggaqNRsySkllcglL  rL ispDRvyInyydmnaanvGwngstfa  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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