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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:02:05 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Lyase_8.html
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#====================================
# Aligned_structures: 2
#   1: 1cb8a.pdb
#   2: 1egua.pdb
#
# Length:        284
# Identity:       62/284 ( 21.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     62/284 ( 21.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           29/284 ( 10.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cb8a.pdb               1  -IEPYHHQFWNGDYVQHLRP--AYSFNVRMVSKRTRRSESGNKENLLGRYLSDGATNIQL   57
1egua.pdb               1  PRTSYLSAFNKMDKTAMYNAEKGFGFGLSLFSSRTLNYEHMNKENKRGWYTSDGMFYLYN   60
                               Y   F   D            F     S RT   E  NKEN  G Y SDG      

1cb8a.pdb              58  RG-PEY-YNIMPVWEWDKIPGITSRDYLTDRPLTKLWGEQGSNDFAGGVS-DGVYGASAY  114
1egua.pdb              61  GDLSHYSDGYWPTVNPYKMPGTTETDA--KRADS-DTGKVLPSAFVGTSKLDDANATATM  117
                                Y     P     K PG T  D    R      G      F G    D        

1cb8a.pdb             115  ALDY---DSLQAKKAWFFFDKEIVCLGAGINSNAPENITTTLNQSWLNG----PVISTAG  167
1egua.pdb             118  DF-TNWNQTLTAHKSWFMLKDKIAFLGSNIQNTSTDTAATTIDQRKLESSNPYKVYVNDK  176
                                    L A K WF     I  LG  I         TT  Q  L       V     

1cb8a.pdb             168  K-TGRGKITTFKAQGQFWLLH-D-----AIGYYFPEGANLSLSTQSQKGNWFHINNSHSK  220
1egua.pdb             177  EASLTEQEKDYPE--TQSVFLESSDSKKNIGYFFFKKSSISMSKALQKGAWKDINEGQSD  234
                                                        IGY F      S S   QKG W  IN   S 

1cb8a.pdb             221  DEVSGDVFKLWINHGARPENAQYAYIVLPGINKPEEIKKYNGTA  264
1egua.pdb             235  KEVENEFLTISQAHK--QNGDSYGYMLIPNV-DRATFNQMIKEL  275
                            EV          H        Y Y   P               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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