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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:57:25 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Lipoprotein_4.html
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#====================================
# Aligned_structures: 2
#   1: 1psza.pdb
#   2: 1toaa.pdb
#
# Length:        298
# Identity:       83/298 ( 27.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     83/298 ( 27.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           33/298 ( 11.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1psza.pdb               1  KKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEAD   60
1toaa.pdb               1  -------GKPLVVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLYTATAGDVEWLGNAD   53
                                   K  VV T   IAD  KNIA     L      G DPH Y     DV     AD

1psza.pdb              61  LIFYNGINLETGGNAWFTKLVENAKKTENK---DYFAVSDGVDV---IYLEGQNEKG-KE  113
1toaa.pdb              54  LILYNGLHLET----KMGEVFSKLR-----GSRLVVAVSETIPVSQRLSLE-E----AEF   99
                           LI YNG  LET                         AVS    V     LE         

1psza.pdb             114  DPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPA  173
1toaa.pdb             100  DPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKAQSLPA  159
                           DPH W          K     L    P            Y   LDKLD     K    PA

1psza.pdb             174  EKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESS  233
1toaa.pdb             160  ERRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIFIESS  219
                           E    VT   AF YFS AYG          T  E        L     Q K P  F ESS

1psza.pdb             234  VDDRPMKTVSQDTN-----IPIYAQIFTDSIAEQGKEGDSYYSMMKYNLDKIAEGLAK  286
1toaa.pdb             220  IPHKNVEALRDAVQARGHVVQIGGELFSDAMGDAGTSEGTYVGMVTHNIDTIVAALAR  277
                                                I    F D     G     Y  M   N D I   LA 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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