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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 07:41:58 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/LDLa.html
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#====================================
# Aligned_structures: 4
#   1: 1ajj.pdb
#   2: 1cr8a.pdb
#   3: 1ldl.pdb
#   4: 1ldr.pdb
#
# Length:         64
# Identity:       10/ 64 ( 15.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     14/ 64 ( 21.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           37/ 64 ( 57.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ajj.pdb                1  -P-------CSAFEFHC-L-SGECIHSSWRCDGG-PDCKDKSDEENCA------------   37
1cr8a.pdb               1  PG------GCHTDEFQCRL-DGLCIPLRWRCDGD-TDCMDSSDEKSCEGV----------   42
1ldl.pdb                1  --AVG--DRCERNEFQC-Q-DGKCISYKWVCDG-SAECQ--------D--GSDESQETCL   43
1ldr.pdb                1  -----LSVTCKSGDFSCGGRVNRCIPQFWRCDG-QVDCD--------N--GSDEQG----   40
                                    C   eF C    g CI   WrCDG   dC                      

1ajj.pdb                   ----     
1cr8a.pdb                  ----     
1ldl.pdb               44  SVT-   46
1ldr.pdb               41  ---C   41
                               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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