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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:43:09 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/IFN-gamma.html
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#====================================
# Aligned_structures: 2
#   1: 1d9ca.pdb
#   2: 1fyha1.pdb
#
# Length:        126
# Identity:       71/126 ( 56.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     71/126 ( 56.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            6/126 (  4.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d9ca.pdb               1  Q--GQFFREIENLKEYFNASSPDVAKGGPLFSEILKNWKDESDKKIIQSQIVSFYFKLFE   58
1fyha1.pdb              1  -MQDPYVKEAENLKKYFNAGHSDVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFK   59
                                   E ENLK YFNA   DVA  G LF  ILKNWK ESD KI QSQIVSFYFKLF 

1d9ca.pdb              59  NLKDNQVIQRSMDIIKQDMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKVMN  118
1fyha1.pdb             60  NFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIDELIQVMA  119
                           N KD Q IQ S   IK DM  KF N    K  DF KL    V DL  QRKAI ELI VM 

1d9ca.pdb             119  DLS---  121
1fyha1.pdb            120  ELGANV  125
                            L    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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