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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:42:52 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/IF4E.html
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#====================================
# Aligned_structures: 2
#   1: 1ap8.pdb
#   2: 1ejha.pdb
#
# Length:        235
# Identity:       41/235 ( 17.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     41/235 ( 17.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           77/235 ( 32.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ap8.pdb                1  MSVEEVSKKFEENVSVDDTTATPKTVL--SDSAHFDVKHPL-NTKWTLWYTKPAVDKSES   57
1ejha.pdb               1  ---------------------------EHYIKHPL------QNRWALWFFKND---KSKT   24
                                                                     N             KS  

1ap8.pdb               58  WSDLLRPVTSFQTVEEFWAIIQ-NIPEP---HELPLKSDYHVFRND-VRPEW-EDEANAK  111
1ejha.pdb              25  WQANLRLISKFDTVEDFWALYNHI----QLSSNLMPGCDYSLFK-DGIEPMWEDEKN-KR   78
                           W   LR    F TVE FWA              L    DY  F  D   P W        

1ap8.pdb              112  GGKWSFQLRGKG--ADIDELWLRTLLAVIGETI---DEDDSQINGVVLSIRKGGNKFALW  166
1ejha.pdb              79  GGRWLITLN-KQQRRSDLDRFWLETLLCLIG--ESFDDYSDDVCGAVVNVRAKGDKIAIW  135
                           GG W   L  K              L          D       G V   R  G K A W

1ap8.pdb              167  TKSE--DKEPLLRIGGKFKQVLKLTDDGHLEFFPHSSANGRHPQPSITL------  213
1ejha.pdb             136  TTE-CENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTAT---------KNRFVV  180
                           T            IG   K  L L          H                    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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