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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:38:28 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/HSP20.html
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#====================================
# Aligned_structures: 2
#   1: 1gmea.pdb
#   2: 1shsa.pdb
#
# Length:        152
# Identity:       27/152 ( 17.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     27/152 ( 17.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           39/152 ( 25.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gmea.pdb               1  SIVRRSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADL   60
1shsa.pdb               1  ---TGIQISGKG-----------------------------FMPISIIEGDQHIKVIAWL   28
                                                                           E        A L

1gmea.pdb              61  PGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERS-SGKFVRRFRLLEDAKVEE  119
1shsa.pdb              29  PGVNKEDIILNA-VGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEEN   87
                           PGV KE        G  L     R              E        R   L    K E 

1gmea.pdb             120  VKAGLENGVLTVTVPKA-EVKKPEVKAIQISG  150
1shsa.pdb              88  ASAKFENGVLSVILPKAES-SIKKGINIE---  115
                             A  ENGVL V  PKA          I    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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