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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 10:23:37 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/HMG_box.html
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#====================================
# Aligned_structures: 5
#   1: 1ckta.pdb
#   2: 1hma.pdb
#   3: 1hrza.pdb
#   4: 1nhn.pdb
#   5: 2lefa.pdb
#
# Length:        102
# Identity:        3/102 (  2.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     11/102 ( 10.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           38/102 ( 37.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ckta.pdb               1  ---KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTM--SAKEKGKFED   55
1hma.pdb                1  S-DKPKRPLSAYMLWLNSARESIKREN--PGIKVTEVAKRGGELWRAM--K--DKSEWEA   53
1hrza.pdb               1  -D-RVKRPMNAFIVWSRDQRRKMALEN--PRMRNSEISKQLGYQWKMLTE--AEKWPFFQ   54
1nhn.pdb                1  N--APKRPPSAFFLFCSEYRPKIKGEH--PGLSIGDVAKKLGEMWNNT--AADDKQPYEK   54
2lefa.pdb               1  --MHIKKPLNAFMLYMKEMRANVVAES--TLKESAAINQILGRRWHAL--SREEQAKYYE   54
                                k p  a        R     e            k  g  W         k     

1ckta.pdb              56  MAKADKARYER-EMKTY-------------------------   71
1hma.pdb               54  KAAKAKDDYDR-AVKEFEA---------------------NG   73
1hrza.pdb              55  EAQKLQAMHRE-KYP------NYKY-R---------------   73
1nhn.pdb               55  KAAKLKEKYEKDIAA-YRAKGKPDAA----------------   79
2lefa.pdb              55  LARKERQLHMQ-LYP------GWSA-RDNYGKKKKRKREK--   86
                            A k                                      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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