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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 10:22:59 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/HLH.html
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#====================================
# Aligned_structures: 5
#   1: 1a0aa.pdb
#   2: 1am9a.pdb
#   3: 1an4a.pdb
#   4: 1hloa.pdb
#   5: 1mdya.pdb
#
# Length:        115
# Identity:        5/115 (  4.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     10/115 (  8.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           67/115 ( 58.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a0aa.pdb               1  ------------------MK-RESH----KHAEQARRNRLAVALHELASLIPAEWK----   33
1am9a.pdb               1  Q-----------------SR-GEKR-TAHNAIEKRYRSSINDKIIELKDLVV--------   33
1an4a.pdb               1  -----------M--DEKRRAQ-------HNEVERRRRDKINNWIVQLSKIIP-D--SSME   37
1hloa.pdb               1  -NDDIEVESDA-------DK-RAHH----NALERKRRDHIKDSFHSLRDSVP-S-L----   41
1mdya.pdb               1  ------------MELKRKTT-NADRRKAATMRERRRLSKVNEAFETLKRSTS-S------   40
                                                           E  rr         L             

1a0aa.pdb              34  ---Q-QNVSAAPSKATTVEAACRYIRHLQQN-----GS-T---------------   63
1am9a.pdb              34  ---GTE-AK--LNKSAVLRKAIDYIRFLQHSN--QKLKQENLSLRTAVHKSKSLK   80
1an4a.pdb              38  ST---K-SG--QSKGGILSKASDYIQELRQSNHR---------------------   65
1hloa.pdb              42  ---Q-G-EK--ASRAQILDKATEYIQYMRRKN--HTHQQDIDDLKRQN-------   80
1mdya.pdb              41  --NP-N-QR--LPKVEILRNAIRYIEGLQALL--R---D----------------   68
                                        k   l  A  YI  l                           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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