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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 07:16:38 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Glyco_hydro_18.html
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#====================================
# Aligned_structures: 4
#   1: 1d2ka.pdb
#   2: 1e15a.pdb
#   3: 1e9la.pdb
#   4: 1edqa.pdb
#
# Length:        575
# Identity:       38/575 (  6.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    101/575 ( 17.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          243/575 ( 42.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d2ka.pdb               1  G------------------------GFRSVVYFVNW--AIY-G------R-GHNPQDL--   24
1e15a.pdb               1  T------------------------RKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITP   36
1e9la.pdb               1  --------------------------YQLMCYYTSW--AKD-R---PIEG-SFKPGNI--   25
1edqa.pdb               1  -TDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEW--GVY-G------R-NFTVDKI--   47
                                                          Y   w                f    i  

1d2ka.pdb              25  -KADQFTHILYAFANIRP--------------------------SG-EVYLS----DTWA   52
1e15a.pdb              37  AKAKQLTHINFSFLDIN---------------------------SNLECAWDPATNDA-K   68
1e9la.pdb              26  -DPCLCTHLIYAFAGMQ---------------------------NN-EITYT----HE-Q   51
1edqa.pdb              48  -PAQNLTHLLYGFIPICGGNGINDSLKEIEGSFQALQRSCQGREDF-KVSIH----DPFA  101
                             a   TH  y F  i                               e        d   

1d2ka.pdb              53  DTDKHYPGDKWD-EPGNNVYGCIKQMYLLKKNNRNLKTLLSIGG-W------TYS-PNFK  103
1e15a.pdb              69  AR------------------DVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSH-ANYV  109
1e9la.pdb              52  DL------------------RDYEALNGLKDKNTELKTLLAIGG-W------KFGPAPFS   86
1edqa.pdb             102  ALQKAQKGVT--AWDD-PYKGNFGQLMALKQAHPDLKILPSIGG-W------TLS-DPFF  150
                                                    l  LK  n  Lk l sIGG w            f 

1d2ka.pdb             104  TPASTEEGRKKFADTSLKLMKDLG-FDGIDIDWEYPE----------DEKQANDFVLLLK  152
1e15a.pdb             110  NAVKTPASRAKFAQSCVRIMKDYG-FDGVDIDWEYPQ----------A-AEVDGFIAALQ  157
1e9la.pdb              87  AMVSTPQNRQIFIQSVIRFLRQYN-FDGLNLDWQYPGSR-----GSPP-KDKHLFSVLVK  139
1edqa.pdb             151  F-MGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLG-SPQDGETYVLLMK  208
                               t   R  F  s          FDG diDWeyP                  f  l k

1d2ka.pdb             153  ACREALDAYSAKHPNG--KKFLLTIASPAGPQNYNK-L-KLAEMDKYLDFWNLMAYDFSG  208
1e15a.pdb             158  EIRTLLNQQTITDG-RQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAG  216
1e9la.pdb             140  EMRKAFEEESVEKD-I--PRLLLTSTGAGIIDVIKSGY-KIPELSQSLDYIQVMTYDLHD  195
1edqa.pdb             209  ELRAMLDQLSVETG----RKYELTSAISAGKDKIDK-V-AYNVAQNSMDHIFLMSYDFYG  262
                           e R  l   s            LT a   g         k       lD i lM YD  g

1d2ka.pdb             209  SWD-KVSGHMSNVFPSTTKPE-------------------STP-------FSSDKAVKDY  241
1e15a.pdb             217  PWE-KVTNHQAALFGDAAGP-TFYNALREANLGWSWEELTR--AFPSPFSLTVDAAVQQH  272
1e9la.pdb             196  PKD-GYTGENSPLYKSPYDI-----------------GKSA--------DLNVDSIISYW  229
1edqa.pdb             263  AFDLKNLGHQTALNAPAWKPD-------------------T--------AYTTVNGVNAL  295
                             d k  gh   l      p                                 d  v   

1d2ka.pdb             242  IKA-GVPANKIVLGMPLYGRAFASTD-------------GIGTSFNGVGGG---------  278
1e15a.pdb             273  LMMEGVPSAKIVMGVPFYGRAFKGVS---GGNG------GQYSSHSTPGEDPYPSTDYWL  323
1e9la.pdb             230  KDH-GAASEKLIVGFPAYGHTFIL---------SDPSKTGIGAPTISTGPP---------  270
1edqa.pdb             296  LAQ-GVKPGKIVVGTAMYGRGWTGVNGYQN-NI------PFTGTATGPVKG---------  338
                               Gv   Kiv G p YGr f                 g        g           

1d2ka.pdb             279  -----S---WENGVWDYKDM----PQ--QGAQVTELEDIAASYSYDKNKRYLISYDTVKI  324
1e15a.pdb             324  VGCEECVRDKDPRIASYRQLE-QMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAES  382
1e9la.pdb             271  -----GKYTDESGLLAYYEVC-TFLNE--GATEVWDAPQEVPYAYQ--GNEWVGYDNVRS  320
1edqa.pdb             339  -----T---WENGIVDYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDLITFDDARS  388
                                     e g   Y            g q         pY y         yD   s

1d2ka.pdb             325  AGKKAEYITKNGMGGGMWWESSSDKT--------GNE-SLVGTVVNGLG-----------  364
1e15a.pdb             383  FKYKAKYIKQQQLGGVMFWHLGQDNR--------N--GDLLAALDRYFNAADYDDSQLDM  432
1e9la.pdb             321  FKLKAQWLKDNNLGGAVVWPLDMDDFSGSFCHQRH--FPLTSTLKGDLN-----------  367
1edqa.pdb             389  VQAKGKYVLDKQLGGLFSWEIDADN------------GDILNSMNASLG-----------  425
                              Ka y     lGG   W    D               l       l            

1d2ka.pdb             365  -------GTGKLEQRENELSYPESVYDNLKNGMPS  392
1e15a.pdb             433  GTGLRYTG-----VGPG------------------  444
1e9la.pdb             368  -------I-----HSAS------------------  372
1edqa.pdb             426  -------N----SAGVQ------------------  431
                                                              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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