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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:17:21 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Glu_synth_NTN.html
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#====================================
# Aligned_structures: 2
#   1: 1ea0a.pdb
#   2: 1llwa.pdb
#
# Length:        434
# Identity:      178/434 ( 41.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    178/434 ( 41.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           25/434 (  5.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ea0a.pdb               1  CGVGFIAAIDGKPRRSVVEKGIEALKAVWHRGAVDADGKTGDGAGIHVAVPQKFFKDHVK   60
1llwa.pdb               1  CGVGFIANLRGKPDHTLVEQALKALGCMEHRGGCSADNDSGDGAGVMTAIPRELLAQWFN   60
                           CGVGFIA   GKP    VE    AL    HRG   AD   GDGAG   A P         

1ea0a.pdb              61  VIGHRAPD-NKLAVGQVFLPRISLDAQEACRCIVETEILAFGYYIYGWRQVPINVDIIGE  119
1llwa.pdb              61  TRNLPMPDGDRLGVGMVFLPQ-EPSAREVARAYVEEVVRLEKLTVLGWREVPVNSDVLGI  119
                                 PD   L VG VFLP     A E  R  VE           GWR VP N D  G 

1ea0a.pdb             120  KANATRPEIEQIIVGNNKGVSDEQFELDLYIIRRRIEKAVKGEQ-INDFYICSLSARSII  178
1llwa.pdb             120  QAKNNQPHIEQILVTCPEGCAGDELDRRLYIARSIIGKKL----AE-DFYVCSFSCRTIV  174
                            A    P IEQI V    G         LYI R  I K         DFY CS S R I 

1ea0a.pdb             179  YKGMFLAEQLTTFYPDLLDERFESDFAIYHQRYSTNTFPTWPLAQPFRMLAHNGEINTVK  238
1llwa.pdb             175  YKGMVRSIILGEFYLDLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMRLLGHNGEINTLL  234
                           YKGM     L  FY DL      S FA YH R STNT P WPLAQP R L HNGEINT  

1ea0a.pdb             239  GNVNWMKAHETRMEHPAFG--THMQDLKPVIGVGLSDSGSLDTVFEVMVRAGRTAPMVKM  296
1llwa.pdb             235  GNINWMAAREKELEVSGW-TKAELEALTPIVNQANSDSYNLDSALELLVRTGRSPLEAAM  293
                           GN NWM A E   E            L P      SDS  LD   E  VR GR      M

1ea0a.pdb             297  MLVPQALTTT-------PDNHKALIQYCNSVMEPWDGPAALAMTDGRWVVGGMDRNGLRP  349
1llwa.pdb             294  ILVPEAYK--NQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDGKIVGAGLDRNGLRP  351
                            LVP A                    Y     EPWDGPA L   DG  V  G DRNGLRP

1ea0a.pdb             350  MRYTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGEMIAVDLQSGKLYRDRELKDHLAT  409
1llwa.pdb             352  ARYCITKDDYIVLGSEAGVVDLPEVDIVEKGRLAPGQMIAVDL-AEQKILKNYQIKQQAA  410
                            RY IT D  I  GSE G V   E    EKGRL PG MIAVDL               A 

1ea0a.pdb             410  LKPWD-KWVQNTT-  421
1llwa.pdb             411  QKYPYGEWIKI--Q  422
                            K     W      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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