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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:29:07 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/GP120.html
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#====================================
# Aligned_structures: 2
#   1: 1g9mg.pdb
#   2: 1g9ng.pdb
#
# Length:        309
# Identity:      267/309 ( 86.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    267/309 ( 86.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            7/309 (  2.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1g9mg.pdb               1  EVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVGAGSCNTSVITQACP   60
1g9ng.pdb               1  ---LENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVGAGSCNTSVITQACP   57
                              L NVTENFNMWKN MVEQMHEDIISLWDQSLKPCVKLTPLCVGAGSCNTSVITQACP

1g9mg.pdb              61  KVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLA  120
1g9ng.pdb              58  KVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLA  117
                           KVSFEPIPIHYCAPAGFAILKCN K FNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLA

1g9mg.pdb             121  EEEVVIRSVNFTDNAKTIIVQLNTSVEINCTGAGHCNISRAKWNNTLKQIASKLREQFGN  180
1g9ng.pdb             118  EEEIVIRSENFTNNAKTIIVQLNESVVINCTGAGHCNLSKTQWENTLEQIAIKLKEQFGN  177
                           EEE VIRS NFT NAKTIIVQLN SV INCTGAGHCN S   W NTL QIA KL EQFGN

1g9mg.pdb             181  NKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWF----NGSDTITLPCRIKQI  236
1g9ng.pdb             178  NKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQI  237
                           NKTIIF  SSGGDPEIVTHSFNCGGEFFYCNSTQLF         N    ITLPCRIKQI

1g9mg.pdb             237  INMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSEL  296
1g9ng.pdb             238  INMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSEL  297
                           INMWQ VGKAMYAPPI GQIRCSSNITGLLLTRDGG   N  EIFRPGGGDMRDNWRSEL

1g9mg.pdb             297  YKYKVVKIE  305
1g9ng.pdb             298  YKYKVVKIE  306
                           YKYKVVKIE


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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