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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:52:48 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/FAD_binding_5.html
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#====================================
# Aligned_structures: 2
#   1: 1ffvc.pdb
#   2: 1fo4a.pdb
#
# Length:        312
# Identity:       52/312 ( 16.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     52/312 ( 16.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           35/312 ( 11.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ffvc.pdb               1  MI--PPRFEYHAPKSVGEAVALLGQLGSDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIP   58
1fo4a.pdb               1  --EGE-RVTWIQASTLKELLDLKAQHP-EAKLVVGNTEIGIEMKFKNQLFPMIICPAWIP   56
                                 R          E   L  Q    AKL  G       MK         I    IP

1ffvc.pdb              59  ELRGIREEGSTVVIGAMTVENDLISS--PIV----QAR---LPLLAEAAKLIADPQVRNR  109
1fo4a.pdb              57  ELNAVEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSV  116
                           EL            GA              V               E     A  QV   

1ffvc.pdb             110  GTIGGDIAHGDPGNDHPALSIAVEAHFVLEGPNGRRTVPAD-GFFLGTYMTLLEENEVMV  168
1fo4a.pdb             117  ASLGGNIITASPISDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYRKTLLGPEEILL  176
                              GG I    P  D      A            RRTVP D  FF     TLL   E   

1ffvc.pdb             169  EIRVPAFAQGTGWAYEKLKRK-TGDWATAGCAVVMRKS--GNTVSHIRIALTNVAPTALR  225
1fo4a.pdb             177  SIEIPYSREDEFFSAFKQASRREDDIAKVTCGMRVLFQPGSMQVKELALCYGGMADRTIS  236
                            I  P           K       D A   C            V          A     

1ffvc.pdb             226  AEAAEAALLGKAFTKEAVQAAADAAIAICEPAEDLRG-------DADYKTAMAGQMVKRA  278
1fo4a.pdb             237  ALKTTQKQLSKFWNEKLLQDVCAGLAEELSL------SPDAPGGMIEFRRTLTLSFFFKF  290
                           A       L K       Q                                         

1ffvc.pdb             279  LNAAWARCA---  287
1fo4a.pdb             291  YLTVLKKLGKDS  302
                                       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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