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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:49:42 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/FAD_binding_2.html
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#====================================
# Aligned_structures: 2
#   1: 1chua.pdb
#   2: 1fuma.pdb
#
# Length:        605
# Identity:      151/605 ( 25.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    151/605 ( 25.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          157/605 ( 26.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1chua.pdb               1  NTLP-EHSCDVLIIGSGAAGLSLALRLAD-Q--HQVIVLSKGPVTE------------FD   44
1fuma.pdb               1  ----QTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVA   56
                                    D  I G G AGL  A   A           SK                   

1chua.pdb              45  ETD-SIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLT-------------   90
1fuma.pdb              57  QDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCP-WSRRPDGSVNVRR  115
                               S   H  DT   G   C    V             L   G                

1chua.pdb              91  ----------------------TLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTR-RV  127
1fuma.pdb             116  FGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD--------DGHV  167
                                                 TL    L  P I         D  V            V

1chua.pdb             128  VGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLE  187
1fuma.pdb             168  RGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDME  227
                            G    N    T     A AVV ATGGA  VY Y TN  I  GDG  MA   G      E

1chua.pdb             188  FNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDF-DE-----------RGEL  235
1fuma.pdb             228  FVQYHPTGLPG--S-GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMEL  284
                           F Q HPT L        L TE  RGEG  L    G R   D                 EL

1chua.pdb             236  APRDIVARAIDHEMKRLGA-------DCMFLDISHKPADFIRQHFPMIYEKLLG-LGIDL  287
1fuma.pdb             285  GPRDKVSQAFWHEWRKG-NTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDP  343
                            PRD V  A  HE             D   LD  H          P I E      G D 

1chua.pdb             288  TQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYG  347
1fuma.pdb             344  VKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFG  403
                             EP P  P AHYT GG   D    T   GL A GE S  GLHGANR  SNSL E  V G

1chua.pdb             348  WSAAEDITRRM--HDISTLPPWDES-----------------RVENPDERVVIQHNWHEL  388
1fuma.pdb             404  RLAGEQATERAATAGNGNEA-----AIEAQAAGVEQRLKDLVNQDGG-E-N-WAKIRDEM  455
                             A E  T R                                      E         E 

1chua.pdb             389  RLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFR-V----------SNNLLELRN  437
1fuma.pdb             456  GLAMEEGCGIYRTPELMQKTIDKLAELQERFKRV-----RITDTSSVFNTDLLYTIELGH  510
                            L M    GI RT             LQ                            EL  

1chua.pdb             438  LVQVAELIVRCAMMRKESRGLHFTLD--YPELLTH--SGPSILSP---------------  478
1fuma.pdb             511  GLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSDVKI  570
                              VAE     AM RKESRG H  LD    E                             

1chua.pdb                  -----     
1fuma.pdb             571  TTLPP  575
                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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