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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:13:10 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Exonuclease.html
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#====================================
# Aligned_structures: 2
#   1: 1fxxa.pdb
#   2: 1j54a.pdb
#
# Length:        200
# Identity:       32/200 ( 16.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     32/200 ( 16.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           36/200 ( 18.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1fxxa.pdb               1  QSTFLFHDYETFGT------HPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP   54
1j54a.pdb               1  --RQIVLDTETTGMNQIGAHY-EGHKIIEIGAVEVVNR-RLTGNNFHVYLKPD--RLVDP   54
                                  D ET G                  A          G     Y KP    L  P

1fxxa.pdb              55  GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGY-NNVRFDDEVTRNIFYRNF  113
1j54a.pdb              55  EAFGVHGIADEFLLDKPT-FAEVADEFMDYIR--GAELVI-HN-AAFDIGFMDYEFSLLK  109
                            A    GI       K    A  A                  N   FD       F    

1fxxa.pdb             114  YDPY-AWSWQHDNSRWDLLDVMRACYALRPEGINWPEGLPSFRLEHLTKANGIEH-SN-A  170
1j54a.pdb             110  RDIPKTNT---FCKVTDSLAVARKMFP-----------GKRNSLDALCARYEIDNSKRTL  155
                            D              D L V R                    L  L     I       

1fxxa.pdb             171  HDAMADVYATIAMAKLVKTR  190
1j54a.pdb             156  HGALLDAQILAEVYLAMTG-  174
                           H A  D              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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