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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 06:17:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Epimerase.html
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#====================================
# Aligned_structures: 4
#   1: 1bwsa.pdb
#   2: 1bxka.pdb
#   3: 1db3a.pdb
#   4: 1udc.pdb
#
# Length:        437
# Identity:       18/437 (  4.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     66/437 ( 15.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          174/437 ( 39.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bwsa.pdb               1  KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR-D-----------------------E   36
1bxka.pdb               1  MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQS--E-RFAFEK   57
1db3a.pdb               1  SKVALITGVTGQDGSYLAEFLLEKG-YEVHGIKR---------------P----KFHLHY   40
1udc.pdb                1  -MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSK-RSVLPVIE-RLGGKHPTFVE   56
                               litG  G  GS     l   g   v                               

1bwsa.pdb              37  LNLLDSRAVHDFFASERIDQVYLAAAKVGGIV------ANN-TYPADFIYQNMMIESNII   89
1bxka.pdb              58  VDICDRAELARVFTEHQPDCVMHLAAESH-VDRSIDGP-------AAFIETNIVGTYTLL  109
1db3a.pdb              41  GDLSDTSNLTRILREVQPDEVYNLGA--MSHV------AVSFESPEYTADVDAMGTLRLL   92
1udc.pdb               57  GDIRNEALMTEILHDHAIDTVIHFAGLKA-VG------ESV-QKPLEYYDNNVNGTLRLI  108
                            d  d             D V   aa                         n  gt  l 

1bwsa.pdb              90  HAAHQND--------V-NKLLFLGSSCIYPKLAK--QPMAESELLQGTLEPTN-EPYAIA  137
1bxka.pdb             110  EAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTP----YAPS--SPYSAS  163
1db3a.pdb              93  EAIRFLG------LEKKTRFYQASTSELYGLVQE--IPQKETTP----FYPR--SPYAVA  138
1udc.pdb              109  SAMRAAN--------V-KNFIFSSSATVYGDQPK--IPYVESFP----TGTP-QSPYGKS  152
                            A r               f   s    Yg       p  E  p      p   sPY   

1bwsa.pdb             138  KIAGIKLCESYNRQYG-RDYRSVMPTNLYGP-----HDN-----FHPSNSHVIPALLRRF  186
1bxka.pdb             164  KASSDHLVRAWLRTYG-LPTLITNCSNNYGP-----YHF-----P---E-KLIPLMILNA  208
1db3a.pdb             139  KLYAYWITVNYRESYG-MYACNGILFNHESP-----RRG-----E---T-FVTRKITRAI  183
1udc.pdb              153  KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIP---N-NLMPYIAQVA  208
                           K             yg          N  gp                      p      

1bwsa.pdb             187  HEATAQGGPDVVVWGS-----G-TPMREFLHVDDMAAASIHVMEL-A---HEVWLENTQP  236
1bxka.pdb             209  LAG----K-SLPVYGN-----G-QQIRDWLYVEDHARALYCVATTGK---V---------  245
1db3a.pdb             184  ANIAQGLESC-LYLGN-----M-DSLRDWGHAKDYVKMQWMMLQQ-E---Q---------  223
1udc.pdb              209  VG----RRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPG---------  255
                                         Gn          Rd  hv D a                        

1bwsa.pdb             237  ML-SHINVGTGVDCTIRDLAQTIAKVVG----YKG-RV--VF------------------  270
1bxka.pdb             246  --GETYNIGGHNERKNLDVVETICELLEELAPNK-P--HGVAHY----------------  284
1db3a.pdb             224  --PEDFVIATGVQYSVRQFVEMAAAQLG----IKL-RF--EGTGVEEKGIVVSVTGHDAP  274
1udc.pdb              256  --VHIYNLGAGVGNSVLDVVNAFSKACG----KP-VNYHFAPRR----------------  292
                                 n g gv     d v       g     k                          

1bwsa.pdb             271  --DAS--------KPD-GT-PRKLLDVTRLHQ-LGWYHEISLEAGLASTYQWFLEN-Q--  314
1bxka.pdb             285  ------RDLITF---------RYAIDASKIARELGCVPQETFESGMRKTVQWYLAN-ESW  328
1db3a.pdb             275  GVKPGDVIIAVDPRYFRPAEETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKH  334
1udc.pdb              293  ------E---------GDL-PAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRH-PQG  335
                                                    D  k    Lgw    tl      t  w l      

1bwsa.pdb                  -----------------     
1bxka.pdb             329  -WKQVQDGSYQGEA---  341
1db3a.pdb             335  S----------------  335
1udc.pdb              336  --------------YPD  338
                                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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