################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:21:41 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DegT_DnrJ_EryC1.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1b9ia.pdb
#   2: 1jg8a.pdb
#
# Length:        429
# Identity:       57/429 ( 13.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     57/429 ( 13.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          132/429 ( 30.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b9ia.pdb               1  KAPEFP------AWP-QYDDAERNGLVRALEQGQWWR---MGGDEVNSFEREFAAHHGAA   50
1jg8a.pdb               1  ------MIDLRSDTVTKPTEEMRKAMAQA---EVGD-DVYGEDPTINELERLAAETFGKE   50
                                                 R     A                 N  ER  A   G  

1b9ia.pdb              51  HALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSS---QAAQ-RLGAVTVPVDVDAA  106
1jg8a.pdb              51  AALFVPSGTMGNQVSIMAHT-QRGDEVILEADSH-IFWYEVGAMAVLSGVMPHPVPGK--  106
                            AL V  GT              G EVI  A           A     G    PV     

1b9ia.pdb             107  TY--NLDPEAVAAAVTP------RTKVIMPVHM----AGLMA---DMDALAKISADTGVP  151
1jg8a.pdb             107  --NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGIN  164
                                 DP  V  A  P      RT  I          G             I    G  

1b9ia.pdb             152  LLQDAAHAHGARW-----QGK---RVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEK  203
1jg8a.pdb             165  VHIDGARIF----NASIASGVPVKEYAGYADSVMFCLS---GLCAPVGSVVVG---DRDF  214
                              D A             G              F         A  G  VV        

1b9ia.pdb             204  YETAFLRHSCGRPRDDRRYFHKIAGSNMRL--NEFSASVLRAQLARLDEQIAVRDERWTL  261
1jg8a.pdb             215  IERARKARKM---------------LGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARF  259
                            E A                                A      L           E    

1b9ia.pdb             262  LSRLLGAIDGVVPQGG-DVRADRNSHYMAMFRIPGLTEE----RRNALVDRLVEAGLPAF  316
1jg8a.pdb             260  LALKLKEIGY----SVNPEDV---KTNMVILRTD-----NLKVNAHGFIEALRNSGVLAN  307
                           L   L  I                   M   R                   L   G  A 

1b9ia.pdb             317  AAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEI  376
1jg8a.pdb             308  AV---------------------------------SDTEIRLVTHK-DVSRNDIEEALNI  333
                           A                                  S     L                 I

1b9ia.pdb             377  IADAVGRA-  384
1jg8a.pdb             334  FEKLFRKFS  342
                                    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################