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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:24:00 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DHPS.html
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#====================================
# Aligned_structures: 2
#   1: 1ad1a.pdb
#   2: 1ajz.pdb
#
# Length:        289
# Identity:       94/289 ( 32.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     94/289 ( 32.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           32/289 ( 11.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ad1a.pdb               1  ------------TKTKIMGILNVTPDSF-SDGGKFNNVESAVTRVKAMMDEGADIIDVGG   47
1ajz.pdb                1  MKLFAQGTSLDLSHPHVMGILNVTPDSFSDGGTHN-SLIDAVKHANLMINAGATIIDVGG   59
                                            MGILNVTPDSF   G        AV     M   GA IIDVGG

1ad1a.pdb              48  VSTRPGHEMITVEEELNRVLPVVEAIVG-FDVKISVDTFRSEVAEACLKLGVDIINDQWA  106
1ajz.pdb               60  ESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTSKPEVIRESAKVGAHIINDIRS  119
                            STRPG     VEEEL RV PVVEAI   F V ISVDT   EV     K G  IIND   

1ad1a.pdb             107  GLYDHRMFQVVAKYDAEIVLMHNG-NGNR------DEPVVEEMLTSLLAQAHQAKIAGIP  159
1ajz.pdb              120  LSEPG-ALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIA  178
                                      A       LMH   N            V  E       Q      AGI 

1ad1a.pdb             160  SNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERD  219
1ajz.pdb              179  KEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQLLN--VGPSERL  236
                             K  LDPG GF K         ARL E      P L   SRK            P ER 

1ad1a.pdb             220  EVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENARHN----  264
1ajz.pdb              237  SGSLACAVIAAMQGAHIIRVHDVKETVEAMRVVEATLSAKEN---KRYE  282
                               A      M G    RVH V                          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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