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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 06:11:17 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DHOdehase.html
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#====================================
# Aligned_structures: 4
#   1: 1d3ga.pdb
#   2: 1ep3a.pdb
#   3: 1h7wa.pdb
#   4: 2dora.pdb
#
# Length:        415
# Identity:       25/415 (  6.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     78/415 ( 18.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          151/415 ( 36.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d3ga.pdb               1  MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPFQDSDMLEVRVLGHKFRNPV   60
1ep3a.pdb               1  ----------------------------------------MTENNRLSVKLPGLDLKNPI   20
1h7wa.pdb               1  ----------------------------------------------ISVEMAGLKFINPF   14
2dora.pdb               1  ---------------------------------------------MLNTTFANAKFANPF   15
                                                                         l v   g kf NP 

1d3ga.pdb              61  GIAAGF-DKHGEAVDGLYK-MGFGFVEIGSVTPK-P-QEGNPRPRVFR--LP--------  106
1ep3a.pdb              21  IPASGC-FGFGEEYAKYYDLNKLGSIMVKATTLH-P-RFGNPTPRVAE--T---------   66
1h7wa.pdb              15  GLASAAPTTSSSMIRRAFE-AGWGFALTKTFSLDKDIV-TNVSPRIVRGTT-SGPMYGPG   71
2dora.pdb              16  MNASGVHCMTIEDLEELKA-SQAGAYITKSSTLE-K-REGNPLPRYVD--L---------   61
                             Asg      e           G    k  tl      gNp PR               

1d3ga.pdb             107  EDQAVINRYGFNSHGLSVV-EHRLRARQQKQAKLTE--DGLPLGVNLGKNKTSVDAAEDY  163
1ep3a.pdb              67  AS-GMLNAIGLQNPGLEVIMTEKLPWLN-EN------FPELPIIANVAGS-----EEADY  113
1h7wa.pdb              72  QS-SFLNIELISEKTAAYW-CQSVTELK-AD------FPDNIVIASIMCS-Y---NKNDW  118
2dora.pdb              62  EL-GSINSMGLPNLGFDYY-LDYVLKNQKEN-----A-QEGPIFFSIAGM-----SAAEN  108
                                 N  g    g                          p                d 

1d3ga.pdb             164  AEGVRVLGP-L-ADYLVVNVSSPNTAGL---------------GKAELRRLLTKVLQERD  206
1ep3a.pdb             114  VAVCAKIGDAANVKAIELNISCP---N--VK--HGG--QAFGTDPEVAAALVKACKAVSK  164
1h7wa.pdb             119  MELSRKAEASG-ADALELNLSCP---H--G-MGERGMGLACGQDPELVRNICRWVRQAVQ  171
2dora.pdb             109  IAMLKKIQESDFSGITELNLSCPNV---P-----GK--PQLAYDFEATEKLLKEVFTFFT  158
                                k          elN ScP                    d e    l   v     

1d3ga.pdb             207  GLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTV-SRPAGL-------Q  258
1ep3a.pdb             165  -------VPLYVKLSPNVT--DIVPIAKAVEAAGADGLTMINTLM-GVRF--DLKTRQPI  212
1h7wa.pdb             172  -------IPFFAKLTPNVT--DIVSIARAAKEGGADGVTATNTVS-GLMG--LKADGTPW  219
2dora.pdb             159  -------KPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFI--DPEAESVV  209
                                   p  vKl P  t  d   iA      g dg    Nt   g             

1d3ga.pdb             259  GA----LRS---ETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIR  311
1ep3a.pdb             213  LA----N-----ITGGLSGPAIKPVALKLIHQVAQDV--DIPIIGMGGVANAQDVLEMYM  261
1h7wa.pdb             220  P-AVGAGK--RTTYGGVSGTAIRPIALRAVTTIARALP-GFPILATGGIDSAESGLQFLH  275
2dora.pdb             210  IK----P--K-DGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLL  262
                                         GG sG  i p al              pIig GG    qd le   

1d3ga.pdb             312  AGASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHRR------  360
1ep3a.pdb             262  AGASAVAVGTANFADP-FVCPKIIDKLPELMDQYRIESLESLIQEVKEG--KK--  311
1h7wa.pdb             276  SGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKS------------------IE  312
2dora.pdb             263  CGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHGKLK--SL----  311
                            GAs  q  tA       v       L  l                         


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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