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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:15:37 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Cytidylyltransf.html
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#====================================
# Aligned_structures: 2
#   1: 1b6ta.pdb
#   2: 1coza.pdb
#
# Length:        169
# Identity:       31/169 ( 18.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     31/169 ( 18.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           55/169 ( 32.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b6ta.pdb               1  -KRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASP------SKKPMFTLEERVALA   53
1coza.pdb               1  MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTD-EFNLQKQKKAYHSYEHRKLIL   59
                            K  I  GTFD    GHI    RA Q  D    AI           KK     E R    

1b6ta.pdb              54  QQATAHLGN-VEVVGFSD--LMANFARNQHATVLIRGLRAVADFEYEMQ-LAHMNRHLMP  109
1coza.pdb              60  ETI----RYVDEVIPEKNWEQKKQDIIDHNIDVFVMGDD----------WE-GKFDFLK-  103
                                      EV                   V   G                    L  

1b6ta.pdb             110  -ELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAKLA  157
1coza.pdb             104  DQCEVVYLPR---TEGISTTKIKEEI-----------------------  126
                              E V L        IS    KE                         


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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